Pyrus x bretschneideri (Chinese white pear): 103947403
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Entry
103947403 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103947403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103947403
03012 Translation factors [BR:
pxb03012
]
103947403
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103947403
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103947403
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103947403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
Ank_2
AAA_19
HA2_N
ResIII
ATPase
nSTAND3
AAA_22
Ank_5
AAA_23
Rad17
Ank_3
T2SSE
NPHP3_N
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103947403
NCBI-ProteinID:
XP_009356588
LinkDB
All DBs
Position
Unknown
AA seq
1276 aa
AA seq
DB search
MARKKKHTKVDEPTKNRLLDALERFNASTDEVYTFEAGLSSFERAFVHEQCRRWSMKSKS
KGKGEHRCISVSKIRKNNTDVPSLSSLTFSEGTKEVLSDLFVRYPPGDEVEDLELSGKSS
DKNESAQRKRDNTFRKPLMNKEEIAKKVESLASKLKNNANLRTIFEDKSKLPIMSYKDVI
TSTVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISATSVAERVSQ
ERGETVGEDIGYKIRLESKAGRHSSIVFCTNGILLRMLVSRGADRSKADASNKETEHNLA
DITHIIVDEIHERDRYADLMLAIIRDMLSSHRHLHLILMSATVDAERFSKYFGGCPIIRV
PGFTYPVKSFYLEDVLSILKSAERNHIDNTVVGLQTEDPDLTEEDKLALDEAINLAWSND
EFDRLLELLSTEGTHKVFNYQHSLTGLTPLMVFAGKGRTAYVCMLLSFAADCHLQAKDGT
TALELAERENQLEIAEILKEHIENSLSNSMKEQLLLDKYLQYFNPENIDVVLIEQLLKKI
CNDSKDGAILVFLPGWDDINKTRERLLMNPHFRDSSRFLIIALHSMVPSFEQKKVFKRPP
HGCRKIVLSTNMAETAITIDDVVYVIDTGRMKEKNYDPYSNVSTLQSSWVSKANAKQREG
RAGRCQPGICYHLYSRLREASLPNFQEPEIKRMPIEELCLQVKLLDPECKIEEFLHKTLD
PPRAETIRNAVSVLQDIGALSLDEKLTDLGEKLGTLPVHPLTSRMLFFAILMNCLDPALT
LACASDYKDPFALPMLPDERTRAAAAKFELASLYGGLSDQLAVIAAFDCWKAAKERGEER
GFCSRYFVSSSTMHMLSGMRGQLQKELSRHGFIPEDVSRCSLNARNPGILRAVLVAGLYP
MVGRLLPPLKNGKRTFVETASGGKVQLHVHSINTKLYKANPGERPLIVYDEVTRGDGGMN
IRNCTVVAPLPLLLLSSEIAVAPADDDDDNDEGSDVDYIEDGSDEDVMEIDRKSGGQHEE
KIMSSPDKSVKVIVDCWLHFGSKALDVAQVYCLRERLSTAILFKVTHPRKDLPPALGASV
YAIACALSYDGLSGITLPVESVESPTSVLESQAYLQFLISGNSHDQHILRPHSKPTRNTG
HKLSKSLRPCEGHGTSLMSHNAHQTHQSALVSHGTHQTHLKPHERPPPQGTSVLAANGAV
RSCTKGNKAANLSDPSSHNVGPPLHWVSKTAHQKPPSEGTRLLAINGGAKVSEPLSQTVG
QPVKSTSRKKRRNGAG
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaagaagaaacatactaaagttgatgaacccacaaagaaccgattactagac
gcactcgagcggttcaacgcttcaactgatgaagtttacacattcgaggccggtctctcg
agcttcgaacgggcattcgtgcatgaacaatgcaggagatggtctatgaaatcgaagagt
aaagggaaaggggaacaccggtgtatctctgtttccaaaattagaaagaataacactgat
gtaccaagtctcagttccttgacattttccgaaggcacaaaagaagtattaagtgacttg
ttcgtacgttacccacctggtgatgaagtggaggacttagaattgtctgggaaaagtagc
gataagaatgagagtgcccagcggaagagggacaatacgtttcgcaagcctttgatgaac
aaggaagaaattgcaaagaaagtggaatcacttgcttctaaattaaagaataatgctaac
ttgagaacgatttttgaagacaagtccaagcttccaattatgtcctacaaggatgtcatt
acatcgacagttgaatctcaccaggtaattcttatatctggtgagactgggtgcggaaag
acaacacaggtcccacaatttattttggaccacatgtggggcaagggtgaggcatgtaaa
atagtgtgtactcaacctcgacgtatctcagccacttcagttgctgagagagtctctcag
gaaagaggagaaactgtcggagaggatattggatacaagatacgattggaaagtaaagct
gggaggcactcatcaattgttttctgcacaaatggaattttattgaggatgctagtttcc
agaggtgctgatagatcaaaagcagatgcctcaaacaaagaaaccgagcataatcttgct
gacataactcacattatagtggatgaaattcatgaaagggatcgctacgctgatttgatg
ctagcaattatcagagacatgctttcttcacaccgtcatctacatctgatattaatgagt
gcgactgttgatgccgaacgattttcaaaatattttggtggctgcccaattatccgtgtt
cctgggttcacctatcctgttaaaagtttctatttagaggatgtactttctatcctgaaa
tctgcagaacgtaatcacattgataacactgtagtaggtttacaaactgaagaccctgac
ttaaccgaggaagataagcttgctttagatgaagctattaatttggcttggtctaatgat
gagtttgatcgccttctagaattgctttctactgaaggaacacacaaagtctttaattac
cagcattctttaaccggacttacaccgttaatggtgtttgctggaaagggtagaactgca
tatgtttgcatgcttttatcttttgctgcagactgccatttacaggccaaggatggaaca
accgcattggagttggctgaacgggaaaaccagctagaaattgctgagatattgaaagag
catatagaaaattctctttctaactcaatgaaagaacaattgttacttgataaatatctc
caatatttcaatcctgaaaatattgatgtggttcttatagagcaattattaaaaaaaatt
tgtaatgattcaaaagatggagccatccttgttttccttccagggtgggacgatataaat
aaaacccgggagagattacttatgaatccacatttcagagattcttcaaggtttctgata
atagctctacattcgatggttccatcttttgagcaaaagaaggtcttcaaacgtccccct
cacggttgccgtaaaattgttctttcaactaatatggctgaaactgccatcaccatagat
gatgttgtttatgttatagacactggtcggatgaaagaaaaaaattatgatccttatagt
aatgtatcaactcttcaatcttcttgggtgtcaaaggcaaatgccaagcagcgagagggc
cgagcaggccgatgccagcctggaatctgttatcatctctattctagacttcgagaagct
tcactgccaaactttcaggagcctgagattaagagaatgccaattgaggagctctgtctt
caggtgaagttactcgacccagaatgcaagatagaagaattcttgcacaagacattggat
cccccacgtgcagagaccatacgcaatgcagtttctgttcttcaagatattggggcactg
tcgctcgatgagaaacttacagatcttggagagaagttaggcactctacctgttcatcca
ctgacaagcaggatgcttttctttgcaatactgatgaactgtctagacccagctttgact
ctggcatgtgcttctgactacaaggatccatttgccctgcctatgttacctgatgaaagg
acgagagctgctgctgctaaattcgaacttgcttcattgtatggtggccttagtgatcag
ctagcagtcattgcagcatttgactgctggaaggctgcaaaagaaaggggtgaagagaga
ggtttctgttctcgatactttgtgtcttcaagcacgatgcacatgctatctggtatgcgt
gggcagctccaaaaggagctaagtcggcatgggtttattcccgaggatgtatcaagatgt
agcttgaatgcaaggaacccaggtatactccgtgctgttcttgtggccggtttgtatcca
atggtgggtagattgcttcctcctctcaagaatgggaaacgaacttttgtagagactgct
agtggtggtaaagttcaattgcacgtccactccattaacactaagttatacaaggcaaat
cctggggaacgtccattgattgtttatgacgaggtaactcgtggggatgggggtatgaat
atacggaactgcactgttgtcgcgccgcttccattattattgctttcatcagaaattgct
gttgctccagccgatgatgatgatgacaatgacgaggggagtgatgtggattacatagag
gatggaagtgatgaagatgtaatggaaatagatcgtaagtcaggtggacaacacgaggag
aaaattatgtcgtctcctgataaatcagtcaaagttattgtcgattgttggcttcatttt
gggtccaaagctcttgatgttgctcaagtttactgcttgagagaacgcctatctacagca
atcttattcaaagttacacatccaaggaaagatttgcctcctgctcttggggcctctgtc
tatgctatcgcatgtgctctatcttatgatggtctatccgggatcacattaccggtggaa
tctgtggagtcaccgacttctgtgctggagagtcaagcgtacttgcaatttcttatcagc
ggtaactcacatgaccaacacatcctccgaccacactctaaaccaacacgtaacacaggc
cataaactttctaaatctctcagaccatgtgaggggcatggaacatcacttatgagccat
aacgcacaccaaacacatcagtccgcacttgtgagccatgggacacaccaaacacacctc
aaaccacatgagaggcctccaccacaaggtactagtgtacttgccgctaatggagcagtg
aggtcttgtacgaaaggaaacaaagcagccaacttgagtgacccttcaagtcacaacgtt
ggaccaccgcttcattgggtttccaagactgcacaccagaagcctccatcagaaggtact
aggttacttgccattaatggaggggcaaaggtgagtgagccattaagtcagactgttggc
caaccggttaagtcaacttcgaggaagaagcgtaggaatggcgccgggtaa
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integrated database retrieval system
