Pyrus x bretschneideri (Chinese white pear): 103947658
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Entry
103947658 CDS
T03446
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03022
Basal transcription factors
pxb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103947658
09124 Replication and repair
03420 Nucleotide excision repair
103947658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxb03021
]
103947658
03036 Chromosome and associated proteins [BR:
pxb03036
]
103947658
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103947658
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103947658
Transcription machinery [BR:
pxb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103947658
Chromosome and associated proteins [BR:
pxb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
103947658
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103947658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
AAA_11
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
103947658
NCBI-ProteinID:
XP_018503040
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MCDWLEGSGFEMGCGTRGRGRWEDEAGRSEAGSHSLMIFSGLTSPLEIGDPREDLLKKLM
PPSLSVSVSAKTQNLTNTTKFQVEDVTVYFPYDHLDPEQYTYMLELKRALDAKGHCLLEM
PTRTGKTIALLSLITSYTLSKPQNPVKLIYCTRTVHEMEKTLAELKLLHNYQAKHLGPQA
QILVVGHPSRKNLCVNSTVLAAKNRDSVDAACRKLTASWVRNLAAENPNVPTFEFYEEYE
KAGSGAVLPPGVYIASIDLRAYGKQRGWCLYSLARHMVQFSNVVVYSYQYMLDLKVAGII
SKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLSKMQHEIERFKATDADRL
RKEYNRLVEGLAQGGNQPITDTWLQNPALPDDILKEAVPGNIRKVDHFVHVLRRLVNHLE
VRLETENVEKEGPVSFVATISSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTIC
NFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLCCHDASLAIKPVFDRFQAVAITSGTL
SPIDLYPHLNFHPVISRSFTMSLTRDCICPMVLTCGSDQLPVSTKYDMRSDLGVVRNYGR
LLLXMVSAVPDEVVCFFVCYSYMDMIVNSWNENGILKEIMQHKLVNIETQDVVETTLALD
NYRKACDCGRGAVFLSVARGKVAEGIDFDRHYGRLVIMFGIPFHYTLSKILLARLEYLRD
TFQIKEGDFLTCDALRQAAQCVGRVIQSKVDYGMMIFADKGYSRHDKRSKLPGWILSHLR
DAHLNLSTDMALHIAREFLRKMAQPYDKVGGGSGKKTLLSQQDIEKMGESIANDLLRLGL
CLKAK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgattggctcgaaggatctgggtttgaaatgggttgtgggacgcgaggaagaggt
agatgggaggacgaagcgggtaggagtgaagcaggaagtcactctctcatgattttctct
gggcttacgagtccgctcgaaattggggatcctcgggaagacctcttaaagaaacttatg
ccaccatccctctcggtctcagtcagtgccaaaacccaaaacctcactaacaccacgaag
ttccaggtcgaagacgtgacggtctacttcccgtacgaccacttagacccggagcaatac
acctacatgctcgagctcaagcgcgccctcgacgccaagggccattgccttctcgagatg
cccacccgcaccggcaaaactatcgccctcctctctctcatcacctcctacactctctcc
aaaccccaaaaccccgtcaagctaatctactgcacccgcacggttcacgaaatggagaag
acgctcgccgagctcaagctcctccacaattaccaggccaagcatttgggtccgcaggcc
cagatcttggtggtcgggcacccgtcgaggaagaatctgtgtgttaattcgaccgtgttg
gcggcgaagaatcgggattctgtggatgcggcttgccggaaattgactgccagctgggtc
aggaacttggcggcggaaaacccaaatgtgccaacttttgagttttatgaggagtacgag
aaagctgggtctggagctgttttgcctcctggggtttatattgcaagtattgatttgagg
gcgtatgggaagcagagagggtggtgcctctactccttggcgaggcatatggtgcagttt
tcgaatgtggtggtttatagttatcagtacatgcttgatcttaaagtggctgggattatt
tccaaggaaatgcaaaaggagtctgttgtggtgtttgatgaggctcataatatcgataat
gtgtgtattgaagcgcttagtgttagtgtgaggaggcagacaattgagggtgccaggagg
aatcttagtaagatgcagcatgaaattgaaaggttcaaggccactgatgcagatagattg
cgtaaagaatacaaccggctagttgagggtttggcacaaggaggaaaccaacctatcaca
gatacttggcttcaaaatcctgctctacctgatgatattttgaaggaggctgtgcctgga
aatattcgtaaagtggaccattttgtgcatgtgttacgaagattggtcaatcatctggaa
gtccgtcttgaaaccgagaatgttgagaaggaaggcccggttagttttgttgccactatc
agttcacaagctggaattgaccagaaaactctgaagttttgttatgatcgcctacactca
ctaatgatgacgttagaaattactgacacagatgaatttttacacattcaaacgatttgc
aactttgcgacacttgtggggacatacactcgtggattctctattataattgaaccattt
gatgagagaatgccacacattcctgatcctgttttacagctttgctgtcatgatgcttca
cttgccataaagcctgtatttgatcgatttcaagcagttgcgattacatctggaaccttg
agcccaattgatctctacccccatcttaatttccatcctgtcatcagtcgaagttttact
atgtcattaacaagagattgcatatgcccaatggttctcacctgtggaagtgatcagctt
ccggtaagtaccaaatatgatatgagaagtgatcttggcgtggtaaggaactatgggagg
ttgctgctgtagatggtttctgctgttccagatgaggttgtatgttttttcgtctgttac
tcttatatggatatgatagtcaatagctggaatgaaaatggaattttgaaggaaataatg
cagcataagcttgttaacatcgagacccaagatgtggtagagactactttggctctcgac
aattaccgtaaggcttgtgactgtgggaggggtgctgtcttcttgtctgttgccaggggg
aaagtagctgaaggaatagactttgatcgacattatggacgattggtgatcatgtttggc
attcctttccattacacattaagcaagattttgcttgcacggctggaatatttgcgggat
acctttcaaataaaggagggagactttttgacatgtgatgccttgagacaagcagctcaa
tgtgtaggccgagtcatccaatcaaaagtggactatggcatgatgatttttgctgacaaa
ggatatagccgtcatgacaagcgatccaaattgcctggatggatactgtcgcatttacgt
gatgcacatctgaacttgagcacggacatggctctgcatatagcacgagagttccttagg
aagatggctcaaccatatgataaggttggtggcggcagcggtaagaaaacccttttatcc
caacaagacatagagaagatgggcgaaagcattgctaatgatttgctgcgtttaggactc
tgcctgaaagcaaagtga
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integrated database retrieval system
