Pyrus x bretschneideri (Chinese white pear): 103948149
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Entry
103948149 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103948149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103948149
03012 Translation factors [BR:
pxb03012
]
103948149
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103948149
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103948149
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103948149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NACHT
Dicer_dimer
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103948149
NCBI-ProteinID:
XP_009357424
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MPSVFFLLLLPSPPSLQFPCGPSPSHPKPIASSSKPSLLAMKDRPPSSYGSVYVPPHHRL
RSVISTPNYTSPASIGSKLRENQTAAAALNRRSSTNGALAYYQTHQQQQLQQQEQFQKPK
LQHTSAYDDGVSEEGSDREVELPSHPTLSPYSSDIDEWKQKLTMLLRDKAKQELVTREKK
DRRDFDKIAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVE
SYLGEFLSQKSRTKESFQNLSFSRSNSSGSIATDEGLFEQPESFASSKGVMEKLLWRRSM
QLRDKQQAWQDSPEGKKMLELRRSLPAYKEKDALLAAISRDQVVIISGETGCGKTTQIPQ
FILESEIEAVCGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDT
RLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPQRPELRLILM
SATLDSELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLEITGCKLTPYNQIDDYGQEKMWK
MSKQAPRKRKSQIVSVVEDALKAADFKGYSPQTRESLACWNPDSIGFYLIEHLLCNICES
DNPGAILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLACHGSMASTEQRLIFDEPGDGV
RKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAG
RVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPEL
LAVQNAIEYLKIIGALDENENLTVLGRYLTMLPVEPKLGKMLLVGAIFNCLDPVLTIVSG
LSVRDPFLTPFDKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLS
AQSMKAIDSLRKEFLSLLRDTDLVDTNTTTHNAWSYDEHLIRAVICYGLYPGICSVVHNE
KSFSLKTMEDGQVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFG
GSFSNGDIDGHLKMLGGYLEFFMKPAIAEMYQCLKEELDELIQIKLLNPRMDTHSYHELL
SAVRLLLSEDQGEGRFVFGRQVLAPSKSKPSVVAAQPALISRTESGPGGDNSKSQLQTLL
TRAGYNAPTYKTTQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQM
GHEYINHMSMMLKKSKKEHK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgccctctgttttcttcctcctcctcctcccatctcctccgtctctgcaattcccttgc
gggccgtcgccttcgcatccaaaacccattgcctcctcctccaaaccctcactcctggcg
atgaaggaccggcctccttcctcgtacggctccgtctatgtccctccccaccaccgcctc
cgctccgtcatcagcacccccaattatacctcccctgcttcaatcggctccaagctccgc
gaaaaccagactgctgctgctgctctcaaccggaggagcagcaccaatggtgctctggca
tactaccagactcatcagcagcagcagctgcagcaacaggagcagtttcagaagcccaag
cttcagcacacttctgcttacgacgacggcgtttccgaagaaggctccgatcgcgaagtt
gagttaccgtcgcatccgacactgagtccttactcatctgatattgatgagtggaaacag
aaattaaccatgctgttacgtgacaaggcaaagcaagagttggttacgagggagaaaaaa
gatagacgtgactttgataaaatagctgctttggcaagcagaatggggctttatagccat
ctgtattcgaaagttgctgtgtttagtaaggttccactgccaaactacagatttgacctg
gatgataggcgccctcagagagaggtgaccttgcctcttgggttgctgaggagagttgag
agctatcttggagagttcctttcccagaagtctaggacaaaggaaagctttcaaaatctt
tccttttctagatcaaacagtagtggcagcattgctactgacgaagggctttttgagcaa
ccagaatcatttgcgtcgagtaagggtgtgatggaaaaacttctttggcggagaagtatg
cagctgcgtgataagcaacaagcttggcaggactctcctgaaggtaaaaaaatgcttgaa
cttcgcagaagtcttcctgcttataaagagaaggatgcattattggcagcaatttcacgg
gatcaggtcgttatcatatcaggtgaaactggctgtggcaagactactcaaattccacaa
ttcattttagaatctgagatagaagctgtttgtggagctgtttgtagtattatatgtaca
cagcctagacggatatctgctatgtctgtttctgaaagagttgcttcagagagaggagag
aaattgggtgactcggttgggtataaggttcggttagaaggtatgaagggaagggatact
cgccttctcttttgcaccaccggcattttgttgagaagattactagttgatagaaatttg
aaaggtgtaactcatgtgattgtggatgaaattcatgaacgtggaatgaatgaagatttt
ctgcttattgttctcaaggatctccttcctcagcgaccagaactgaggttgattttgatg
agtgcaaccctagattctgaacttttctcatcctactttggtagggctcagataattcat
gttccaggttttacatatccagttcggactcattttctggaggatgttctggaaattacg
ggatgcaaattaactccatacaatcagattgatgattatggccaagaaaagatgtggaaa
atgagcaaacaggcaccaagaaagaggaaaagccaaattgtttctgttgttgaggatgca
cttaaagcagccgattttaaggggtatagtccacagactcgggagtctctagcatgttgg
aatcctgatagtatcggtttttatctgattgagcatctcttgtgcaatatctgtgagagc
gacaatcctggtgccattctagtttttatgactgggtgggatgacatcaattctctgaag
gaaaagttacatgccaatcctctattaggcgatccaagccgagtcttgttactagcatgc
catggttctatggcaagtactgagcagaggctaatatttgatgagcctggggatggagtg
aggaaaatagtgctggctactaatattgctgagacaagtatcacaattaatgatgttgtt
tttgtacttgattgtggaaaggcaaaagagacttcatatgacgcactgaacaatactcct
tgtttgcttccttcctggatttccaaggtttctgctcaacaaagaagaggaagagcagga
cgtgtccagccaggggaatgttatcatctctatcctagatgtgtctatgatgcatttgca
gagtatcaattgccagagattttgaggacacctctgcagtctctctgtctgcaaataaaa
agtttaaacctcggaagcatttctgagttcttatctagggctctgcagtcaccagaatta
ctcgcggtgcaaaacgccatagagtatttaaagatcatcggggccttggatgagaatgag
aatctgactgttttaggccgctatctaactatgcttcctgttgagccaaaacttggaaag
atgctcttggtaggtgccatcttcaactgcctggatccggttttgactattgtttctggc
cttagtgtcagagatcctttccttacaccatttgacaagaaagatcttgctgaggctgca
aaatctcagttctcccgggacaatagtgatcaccttgcacttgtgcgggcctatgagggc
tggaaggttgctgaaagagactttgctggatatgattattgctggaagaattttctttca
gcacaatcgatgaaagctattgattcccttaggaaggagttcctctctttgcttagggat
actgatcttgttgataccaacaccaccactcataatgcatggagttatgatgagcatctc
atccgtgcagttatttgctatggcctgtatcctggaatctgctctgttgtgcacaatgag
aagtcattttcgctgaaaaccatggaggatggccaggtgctgctatactcgaactctgtc
aatgctagggattctaaaattccatatccatggctggttttcaatgagaagataaaggtg
aactctgttttcctacgggattcaacagctgtgtctgactcagtgctcctcctatttggt
ggaagtttttcgaatggggatattgatggacacttgaaaatgctgggaggatatttggaa
ttcttcatgaaacctgctatagcagaaatgtatcaatgcttaaaagaggaacttgatgag
ttaattcaaatcaaactactgaaccccaggatggacacacacagttatcatgaactcctt
tctgcagtgcggttgctgctctcggaggatcaaggtgaaggtagatttgtatttggccgc
caggtccttgcaccctcaaagtcaaagccgtctgtggtggcagcacagccagccttgatt
tcaagaactgaaagtggacccgggggtgacaattccaagagtcagctccagacattgctc
acacgagcaggatataatgcacccacgtacaaaactacgcagctcaagaacagccagttc
cgagctacagtggagtttaacggaatgcaaattatgggccacccatgtaacaacaagaag
agtgcagaaaaagatgcggcagcagaggccattcagtggctggtgagtggaacacaaatg
ggccatgagtacatcaatcatatgtcaatgatgttgaagaaaagcaaaaaggagcacaaa
taa
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