Pyrus x bretschneideri (Chinese white pear): 103948908
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Entry
103948908 CDS
T03446
Name
(RefSeq) uncharacterized protein LOC103948908 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103948908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pxb03000
]
103948908
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103948908
04121 Ubiquitin system [BR:
pxb04121
]
103948908
Enzymes [BR:
pxb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103948908
Transcription factors [BR:
pxb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103948908
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103948908
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103948908
Ubiquitin system [BR:
pxb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103948908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
zf-UDP
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103948908
NCBI-ProteinID:
XP_018503407
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MSDQGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRTPY
DKEKIVGTAGKCVRLVAEINTEKKMKSQKAKVKSTEGRKQLTSVRVIQRNLVYIVGLPLN
LADEDLLQRREYFGQYGKVQKVSMSRTAAGVIQQFPNNTCSVYITYLKEEEAIRCIQNVH
GFLLDGRSLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRV
QHITGTENSVQRRSGSVLPPPLDDYCNTSSASAAGPIIKNGSSNTESLIRGSPPNGSSGR
SIALPAAASWGTRVSNCQPPVTHIISSNGHSKQKPDTVSCTLPFSSAAVATVQSSTVHSD
AGNRSALNEEIQTVHAKSKPESLKIVKQRSGVDCQNDLSDKHAAPDEGSASANVSSQLSA
PSVSKDNDRGSSMQANLSNPTNYNHLSYNSRHENENIFSAEEVVQNLCSDIPLMSIDRNA
QVEHSSVVGPNSSLSDYSFVKSPRNQQYCAEQSREPPTTGDKAVTPVNGVCVTREQSNWT
LDLQAQLVPSTSSEVEEDVLSFDNQRLKDPEVSRSTYLPGLPNTVHAPNHCRSPLLHNEA
YGAVYASADRLFVDNKVRDSSLLSSSSLSITSNGYPENMVTRSSGSERPLEHSYPLLNDI
PGKHTGRFLDDAANPDFSTAVDKGESSIISNILSMDSLTWDDSLTSPQHFSKFLGETDRQ
SGALKMSSPWKVQNNNQSRFSFARQEDAKNQAFDVQSSLNVGGQFSNNQSFHQGFSENRD
LFLDNLGIGNVFPSSTSEESENHASNHLAFSSNKLSAVSRAQISAPPGFSVPSRAPPPGF
TSHERVDQDFDPLSGNHLYDNSSLLRNAYQPQATGNIGSSADIEFMDPAILAVGKGRLQG
GLNNQGLEMRSNFPSQLSGYENDARLQLLMQRSLAPQQNLRFPDFGDGFSHINDSYGFSS
RRLEQSPASNLSPFSQMSLQQSRNRGMSNGHWDGWNEVQGGSNVGMSELLRNERLGFNKF
YSGYEESKFRMPSSGDLYNRTFGR
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccagggagaaaagacttgccctctttgcgcggaggagatggatttgacagat
cagcaattgaagccatgcaaatgtggttatgagatatgtgtttggtgttggcaccacata
atggacatggctgagaaggatgagacagaggggcggtgccctgcatgccgcactccttat
gacaaggaaaagattgtaggaacggctggaaagtgtgtgaggctggtggcagaaatcaac
actgagaaaaagatgaaatctcagaaggcaaaggtgaaatctactgaagggcggaagcag
ctgactagcgtgcgagtcattcaacggaacctcgtttacatagttggattgcctcttaat
ctggcagatgaagatcttctgcagcgcagagaatattttggtcagtatgggaaggttcaa
aaagtgtctatgtctcgaacagcagctggtgtcattcagcaatttccaaacaatacatgt
agtgtatatattacatacttgaaagaggaggaagcaatccgttgtattcaaaatgtacat
gggttcctcttggatggtagatctttgagggcttgctttgggaccacaaaatattgtcat
gcatggctgaggaatgtgccttgcaccaatcctgattgtttgtatctgcacgaggttggg
tctcaggaggatagtttcactaaagatgaaataatttctgcatacactaggagtagggta
cagcatattactggtacagaaaacagtgtgcaacggcgttcagggagtgttttgcctccc
ccactagatgattattgcaacaccagttctgcttctgcggcaggaccaattattaaaaac
ggttcaagtaatactgaaagtcttattagaggttctcctccaaatggaagctctggtaga
tctattgctcttccagctgcagcctcatggggaacacgtgtttcaaactgccaaccacca
gttacacatataataagttcaaatggacattcaaaacagaaacctgatacagtcagttgc
acattgccattttcttcagcagctgttgctactgttcagtcatctacagtgcatagtgat
gctggaaataggtcagcattaaatgaagaaattcagactgtgcatgctaaatctaaacca
gaatcattgaagattgtgaaacagcgtagtggcgtggattgtcaaaatgatctgtctgac
aagcatgctgcacccgatgaaggctctgcttctgcgaatgttagcagccagttatctgcc
ccatcagtatccaaggacaatgatagaggcagtagcatgcaggcaaaccttagcaatccc
accaactataatcatctatcttacaattctcgtcacgaaaatgaaaacattttttctgct
gaagaagtggtccaaaacttatgctctgatatccctctaatgagcattgatagaaatgcg
caggttgaacattccagtgtagtcggacctaatagttccctttcagattactcctttgtt
aaatcgcctcggaaccaacaatattgtgctgagcaatctagagagcctccaacaactggt
gataaagctgtcacacctgttaatggggtgtgtgttacaagggaacaatccaactggacc
ctagatttgcaggcccaattagtgccaagtacatcttcagaagtggaagaggatgtacta
tcttttgacaatcaaagactcaaggatccagaagtgagtcgatcaacatatttgcctggt
ttgcctaatacagtacatgctccaaaccactgtaggtctcctttgttgcataatgaggct
tatggtgcagtttatgccagtgctgatcgtctatttgtagataacaaagttagggacagt
tcacttctatcttcgtccagtctttcaataacatctaatggataccctgaaaacatggta
accagatcttctggttcagagaggccattggagcattcctatcctcttctaaatgacatc
ccagggaagcacactggaagattcctggatgatgcagcaaatcctgatttcagtactgct
gttgacaagggagagagtagcataatctcaaatatattatcgatggactcactaacatgg
gatgactcactaacatcaccacagcatttctccaaattcttgggtgaaactgatagacag
tctggagctctcaaaatgtcgagtccttggaaagtacaaaataacaatcagtccagattc
tcttttgcaagacaggaggatgctaaaaatcaagcatttgatgtacagtcatctctgaat
gttggcgggcagttttctaataaccagtcattccaccaaggcttttctgaaaatagagat
ttatttttggataatctaggaattggcaatgttttcccatcaagtacttctgaagaatct
gaaaatcatgccagcaatcatttagctttctcttctaacaagctttctgcggtttcaagg
gctcaaatttctgctcctcctggattctctgtgccaagcagggcaccacctccgggcttt
acttctcatgagagagtggatcaggactttgaccctctgtctgggaatcatctgtatgat
aattcatctttgttgagaaacgcatatcaacctcaggcaactggaaatattgggagctcc
gctgatattgagtttatggatcccgctatattggcagttggaaaggggagactgcaaggt
gggcttaacaaccaaggcctagaaatgagatcaaacttcccttcgcagttaagtgggtat
gaaaatgatgcaaggcttcaactattgatgcaaagatcactggccccacaacaaaatctt
agatttcctgattttggggatggtttttctcacatcaatgattcttatggtttctcctca
aggcgtttggagcagtccccggctagcaatctttcccctttttcgcaaatgtccctccaa
cagtccagaaaccggggcatgtcaaatggccactgggatgggtggaatgaggttcagggt
ggaagcaatgtaggtatgtcagagctcctgagaaatgagagactaggattcaacaagttt
tactctggttatgaagaatcaaagtttcggatgcccagttctggtgatctatataacaga
acatttgggaggtaa
DBGET
integrated database retrieval system
