Pyrus x bretschneideri (Chinese white pear): 103950611
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Entry
103950611 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103950611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103950611
03012 Translation factors [BR:
pxb03012
]
103950611
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103950611
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103950611
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103950611
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
Dicer_dimer
NPHP3_N
AAA_30
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
103950611
NCBI-ProteinID:
XP_009360116
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MPYSALFQGYIFRTTTMSLKPSTTSTTTVLVSLRGTHHRRHHVTFVRPSMLLGCSMRNSR
YHHTQCLAPPLNWNACYYLPRHVGDVACQASSRAVELDWKQRKQLRSSAVPFYQQNLSYG
RFAYQDASASEESDAELGSSQRQMGGSTLDNIDEWRWKLTMLLRNKDEQELVSRERKDRR
DFDHLSALASRMGLHSRQYSRVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVDAHL
KAYLSQKPMSQGNVSDLSLSRSNSSRSITNDGGHYEQQEPLIQNTDAMEKILQRKSLQLR
NRQRHWQESPEGQKMLELRKSLPAYKKKDALLKAVSENQVLVVSGETGCGKTTQLPQYIL
ESEIEADRGASCSIICTQPRRISAMAVSERVAAERGENLGESVGYKVRLEGMKGRDTRLL
FCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT
LNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTGYQLNQYNQIDDYGHEKSWKMQK
QAQGFKKRKSQIASSVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIGNLLLHIVRKE
RPGAILVFMTGWDDINSLKDQLHAHPLLGDPTRVLLLACHGSMPSSEQKLIFDRAEDGVR
KIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGR
VQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPL
SVQNAVEYLKIIGALDDNEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVVAGL
SMRDPFLMPHDKKDLAESAKAQFSAHENSDHLALIRAYDGWRSAERTQSGYEYCWRNFLS
VQTLKAIDSLRKQFFFLLKDAGLVDHNTENCNTWRHDQHLVRAVICAGLFPGICSVVNKE
KSIMLKTQEDGQVMLYSSSVNGNIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFG
GNISRGGLDGHLKMLEGYLEFFMNPALAETYLCLKRELDELIHNKLLNPILDMQSHTNLL
SALRLLVSEDQCEGRFVFGRKVPVPSKKATQEKVPKLKGTMKKVAENNNYKNHLQTLLTR
AGHDAPTYKTKPLKNNQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENHSSS
TDIDHMSMLLKKSRKKSQKGTSFDSAKWG
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactccgccctcttccagggatatatattcaggaccaccaccatgtccctcaaa
ccctccaccacttccaccactaccgttctcgtctctctccgcgggacccaccaccgccgc
caccacgtaactttcgtaaggccgtcgatgctgctgggatgctccatgaggaacagccgg
taccaccacacgcaatgccttgctccgccgctgaattggaatgcgtgctattatctgccg
cgtcatgtgggggacgtcgcgtgccaggcatcgtctcgggcggtggagctggattggaag
cagaggaagcagctgaggagttcggcggtgccgttttaccagcagaatttgagctatgga
cggtttgcgtatcaggacgcctccgcgagtgaggagtccgacgccgaactggggtcgtct
cagcgccaaatgggtggttcgacccttgataacattgacgaatggagatggaagttaacc
atgcttcttcgcaacaaagatgagcaagaattggtgtccagggaaagaaaggatagacgc
gattttgatcatctttcagcactggcaagtaggatgggtttgcatagccgtcagtattct
agagttgtagtatttagcaaagttcctcagccaaattacagacctgatctggacgataag
cggccacaaagagaggttgtcttaccttttggacttcatagagaagtagatgctcatctc
aaagcctacctatctcaaaagccaatgagccaaggaaatgtatcagacctttccttatca
agatcaaacagtagtagaagcataactaatgatggaggacattatgagcagcaggagccc
ttgatacagaatactgatgccatggagaaaattcttcagcggaaaagcttgcaactgcgt
aataggcaacgacattggcaggaatctccagaaggtcaaaagatgcttgaacttcgtaaa
agtctgcctgcatacaagaagaaagatgcgttgttaaaagctgtgtcagaaaatcaggtc
ttagttgtctcaggcgaaacaggttgtggtaaaactacgcagctccctcagtacatttta
gaatctgagattgaagctgatcgcggagcgtcctgcagtattatttgtacccagcctaga
cggatatctgccatggctgtttctgaaagagttgctgcagaacgaggggagaatctgggg
gaatctgttggttacaaagttaggcttgaagggatgaaagggcgggacacccggcttctt
ttttgcaccactggtatattattgaggagattacttgttgacagaaagttgagaggtgtt
acacatgtcattgttgatgagattcatgaacgcggaatgaatgaagattttcttcttatt
gttctgaaagaacttctccctcgccggccagagttgaggttgattttgatgagtgccacc
ctaaatgctgagcttttctcctcctactttggtggtgctccaatgatccatattcccggg
tttacatacccagtccgagcacattttctggagaatattctagaaatgactgggtatcag
ttgaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaaatgcagaaa
caagctcaaggtttcaaaaagaggaagagccaaattgcttctagtgttgaggatgtactt
gaagctgctgactttagggagtacagtccaaggactcaggagtctctgtcctgttggaat
cctgactccattggttttaacctcattgggaatcttcttttacacatagtcaggaaagaa
cggcctggcgcaattttggtttttatgacgggttgggatgacataaattccttgaaggat
caactccatgctcatcccctattaggagatcctaccagggtcctactgctagcatgtcat
ggttccatgcctagctctgagcagaaattgatatttgatagggcagaagatggtgttcgg
aaaatagttctagctacaaacatggctgagactagtatcactatcaatgatgtagttttt
gttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataacactccctgt
ttgcttccatcctggatttcaaaggctgcttctcggcaaaggagaggcagagctggtcgt
gttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcctttgctgat
tatcagttgcctgaacttttgaggactccgttgcaatctttatgtttacaaatcaaaagt
ctacaacttggaagtatttcagagttcctatctaaggccttgcagccaccggaacctctg
tcggttcaaaatgctgttgagtatttgaagatcattggggctttagatgataatgaagat
ctgacagtgttaggacgtcacttgtcagtgcttcctgttgagcctaaacttggaaaaatg
ctcatattagggtctattttcaactgtctggatccagtaatgactgttgtcgcaggcctc
agtatgagagatccattccttatgccgcatgacaagaaggatcttgcagagtcggcaaaa
gcacagttctctgctcatgaaaacagtgatcatcttgctctcatccgagcttatgatggt
tggagaagtgctgaaagaacacagtctggctatgagtactgctggagaaacttcctttct
gtgcaaactctgaaagccattgactctcttcggaagcagttcttctttttgctcaaggat
gcaggtctggttgaccataatacagaaaactgcaatacatggcgccatgatcagcatctt
gtccgagcagtcatctgtgctggattattccctggaatatgctctgttgtgaacaaagag
aagtcgattatgctgaaaacacaggaagatggacaagtgatgctgtactcgagttctgtc
aatggaaacatacccaaaattccatatccatggcttgtcttcaacgaaaaggtgaaagtg
aattcggtttttctccgggattcaactggtatatctgattctgtgctccttttgttcgga
ggcaacatttccaggggtggtctggatgggcacttgaagatgctggaaggatacttagag
tttttcatgaatcccgcattagcagaaacatatctttgcttaaagagggagcttgatgaa
ctgatccataataagctcctgaatcccatattggatatgcaatcacacacgaacctccta
tcagcgctaagattactggtctcagaggatcaatgtgagggtagatttgtatttggtcgc
aaggtgccagtgccctcaaagaaggcaacacaagagaaggtaccaaagttaaaaggcacc
atgaagaaagttgcggagaacaataattacaaaaatcacctccaaacattgctcaccaga
gccgggcatgatgcacccacctacaaaacaaaaccattgaaaaacaaccagtttcgttcc
acagtgatcttcaatgggttgaactttgtaggaaaaccttgcaatagtaagaaagaagca
gagaaggacgcagctgctgaagctgtactctggttaaagggagagaatcattcatcatcc
acagatattgaccatatgtcgatgctgcttaagaaaagtagaaagaaaagccagaaaggg
acctcatttgatagtgccaaatggggttaa
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