Pyrus x bretschneideri (Chinese white pear): 103951991
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Entry
103951991 CDS
T03446
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103951991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103951991
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103951991
mRNA degradation factors
5'-3' decay
Decapping complex
103951991
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103951991
NCBI-ProteinID:
XP_009361780
LinkDB
All DBs
Position
Unknown
AA seq
821 aa
AA seq
DB search
MEGSESRGSIQEAASSIPQDLNQLQLNSSGEVFDASQYAFFGKDSVEEVELGGLDEEEAP
VAFDDEEFLYNRQEVDISLSDIDDFSLTFEKLNKDVSGTRSAGVIGDRGSRESSSAAEWA
QEHFPNWIDEEILEAESTQDGKRWSSHPYSSARPVESMPLYRTSSYPEPQQQQLQQQHHQ
HFTSEPILVPKSAFTSYPPPGGRPQQASPNRQASHLNPYLSGGPQGGLSSPNQSPYSSSQ
LQLNGLPHVSHFGGNLPQLNPGLSNSRPQKQWANQSGVYGDHPGLMNNLLQQQLAHQNGL
VPPQLMHQQQSQPQDPRLHHPVQPSFNNLSVMQSQLFNPHLSASPPLVSKFEAMLGMGDL
GDQRPKSAQKVRLNMRFSQHGFDTGSHRREGGWPQFRSKYMTADEIENILRMQLAATHSN
DPYVDDYYHQFCLSRKSAGAKLKHHFCPTQLRDLPPRARANTEPHAFLQVDALGRVPFSS
IRRPRPLLEVEPPNSSSPGNTEQKVFEKPLEQEPLLAARVAIEDGLCLLLDVDDIDRFLQ
FNQLQDGGTQVRHRRQALLEGLAGSLQLVDPLGNNGPTVGLHKDDLVFLRLVSLPKGRKL
LAKYLQLLFPGGELMRIVCMAIFRHLRFLFGSYPSDPVAAETTNILARVVSSCARGMDLG
ALSACLAAVVCSSEQPPLRPLGSPAGDGASLILNSVLERATELLTDPHAVSNCNMTNRQL
WQASFDEFFGLLTKYCVNKYDTVMQSLLMQAPPNVAIIGSDAARAIGREMPVELLRASLP
HTDEHQRQLLLDFTQRSMPIGSSSSGDGGNGSHMNSESVLS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtctgaaagtaggggtagtattcaagaggctgcctcttctatccctcaagat
ctcaaccaattgcagcttaattcctcaggagaggtattcgacgcatcgcagtacgcattt
tttggtaaagattctgttgaggaagttgaattgggaggtttagatgaagaggaggctcca
gttgcgtttgatgatgaggagtttctatataatagacaagaggttgacatatctctatct
gatattgatgacttttcattaacctttgaaaagttaaacaaggatgttagtggaactagg
agtgctggagtaattggtgatagaggatccagagaaagttcatctgctgctgaatgggcg
caggagcattttcctaactggattgatgaagagatacttgaagctgaaagcactcaggat
gggaaacgatggtcttcacacccgtattcttcagctcgtccagtagagtcgatgcctttg
tatagaacttcttcatatcctgaaccccagcaacagcagctgcagcagcagcaccatcaa
cattttaccagtgaaccaattctggtgccgaaatcagctttcacttcttatccgcctcca
ggtggcagacctcagcaggcttcgccaaaccgccaagcaagccacctgaacccatatctt
tctggtgggccccaggggggattatcttctccaaaccaatctccttactctagctctcaa
cttcaactgaatggattacctcatgtatcgcattttggtggaaatttgcctcagcttaac
cctggtctctctaatagccgaccccaaaagcaatgggccaatcaaagtggtgtttatgga
gatcatccgggtcttatgaacaatttgttgcaacaacagctagctcatcagaatggttta
gtgcctccacaattgatgcatcagcaacagtcacaaccacaggatcctagactgcatcat
ccagttcagccatcatttaataatttgtcggtaatgcagtctcaactgtttaacccccat
ctttctgcatccccgcccttggtgagcaagtttgaagcaatgctcggtatgggtgatctt
ggagatcaaaggccaaaatcagctcagaaagttagactgaatatgcgtttttctcaacat
ggatttgatacaggtagccacaggagggaaggtgggtggccacaatttaggtccaagtat
atgacagctgatgaaattgaaaatatactccgaatgcagctagctgcaacacacagcaat
gacccatatgtcgatgattactaccaccagttttgcctttcaagaaaatctgctggggcc
aagttgaaacaccatttctgcccaactcaattaagggatcttcctcctcgagcacgagct
aatactgaaccacatgcttttctccaggttgatgctcttgggagagtccccttctcctca
atacgcaggcctcgccctcttcttgaagttgagcctccaaattcatctagccctggcaac
actgaacaaaaggtttttgagaagccgctagaacaggaaccattgcttgctgctagggtt
gcaattgaggatgggctttgtcttctcctggatgtggatgatattgatcgttttctacaa
ttcaatcaactccaagatggtggaacccaagtgaggcatcggcggcaggccttgcttgaa
ggacttgcaggatctcttcaattagttgacccacttggcaacaatggccccacagttggg
cttcataaggatgatcttgtatttctaaggttagtctcacttcccaagggccggaagctc
ctggcaaagtacctgcagcttttatttcccggtggtgagctcatgcgaatagtctgtatg
gccatctttcgtcatttaaggttcttgtttggtagctacccttctgatccagtggctgca
gaaactacgaatattcttgcaagggttgtttcatcatgtgctcgaggtatggaccttggt
gcacttagtgcctgtcttgcagcagtggtttgttcctcagagcaacccccgcttcgcccc
cttggaagccctgcaggagatggggcttctcttatcctcaattcagttcttgagagggca
actgaactcttaactgatcctcatgctgtaagcaactgcaatatgaccaatcggcaactt
tggcaggcctcctttgatgagttctttggccttctgaccaagtactgtgtaaataaatat
gatactgtaatgcagtcactgctaatgcaggcccctccgaatgtggctattattggctca
gatgcagccagagcaattggtcgtgaaatgccagttgaactgttgcgtgcgagccttcct
cacactgatgagcatcagaggcagctgttgttggacttcacgcagcggtctatgcccata
ggatcatctagcagtggtgatgggggaaatggttctcacatgaattcagagtctgtgctg
agttga
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