Pyrus x bretschneideri (Chinese white pear): 103952294
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Entry
103952294 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103952294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103952294
03012 Translation factors [BR:
pxb03012
]
103952294
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103952294
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103952294
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103952294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
AAA_16
PhoH
AAA_23
Myosin_head
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103952294
NCBI-ProteinID:
XP_009362140
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MRNSRAALGLLLKSVSNNNPCCFPSSRKTNGRCRTLLLLLQPHSSSSISDGGARFLISKR
AFCGYAAEQFSDDEYACEFEGQKASSSVANIDEWKWKMSLLLRSEKDQEIVSRDKRDRRD
YEQISNLAKRMGLYCEIYGKAVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQ
EHLDRLQLNSGKFTGNRGDSEHIGQVENANLDENADSFLDGSVMEKVLQRRSLRMRNMQR
AWQESPEGKKMLDFRKSLPAFKENERLLQAIAQNQVIVISGETGCGKTTQLPQYILESEI
ESGRGAFCSIICTQPRRISAMAVGERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTS
GILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAE
LFSSYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKLWKTQKQLVP
RKRKNQITALVEDALNKSSFESYSARARDSLSCWTPDCIGFNLIEAVLCHICRKERRGAV
LVFMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMGTSEQKLIFGRPPPNIRKIVLA
TNMAEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVLPGE
CYHLYPKCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLAVQNA
IGFLTSIGALDENENLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQ
AIHSLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSMSF
KTMDDGQVLLFANSVNVRYQTIPYPWLVFGEKVRVNTVFIRDSTGVSDSILILFGGALNH
GVQAGHLRMLDGYIDFFMDPSLVDCYLKLKEELNELIQKKLEDPSLDIHKEGKYLMLAVQ
ELVSGDQCEGRFVFGRDSRKPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHL
KTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSENHRDEEDNSPPDITDN
MLKLLGKRRRSKRQSG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattcgagagcagcacttggtctccttctcaagtcagtctccaacaataaccct
tgttgttttccttcttcccgcaagacaaacggtcgctgccgcactttgcttcttctactc
caaccccactcttcttcttcaatttccgacggcggagcccgattcctcatttcaaagcgc
gccttttgcgggtacgccgccgagcagttctccgacgatgagtacgcatgcgaattcgaa
ggccaaaaggcatcgtcttcagtggcgaacattgacgagtggaaatggaaaatgagcttg
ctattacgcagcgaaaaggaccaagagattgtatccagagataagagagataggagagac
tatgagcagatatctaaccttgccaaaaggatgggactttattgtgaaatatatgggaaa
gcggtggtggccagcaaggtccctcttccaaactacaggcctgatttggatgataagcgg
ccacaaagagaggtggttatccctcttggcttgcaaaggagggtagagggtttgctgcaa
gagcaccttgatcgactccagttaaactctgggaagttcactggaaatagaggggactct
gagcacattggtcaggtcgaaaatgcaaacctagatgagaatgcagattcttttctagat
gggtctgtaatggagaaggttcttcaaaggaggagtttgcgaatgcgtaatatgcaaaga
gcttggcaggaatcacccgaaggcaagaagatgctagacttccgcaaatcactaccggct
ttcaaggagaatgaaaggttgctgcaagcaattgcacagaatcaggtaatagtgatatct
ggggagactggatgtggtaagaccactcaacttcctcaatatatcctagagtcagaaata
gaatctggccgtggagcattctgtagcatcatttgcacacagcctcgaagaatatctgct
atggctgttggagaaagagtgtcggcagagaggggagagcctcttggtgaaacagttggc
tataaagttcgattggagggaatgaagggaaaaaatacccatctgcttttttgtacaagt
ggtattttacttcgccgtctgttgagtgatcgtaacttgaatggtataacccatgttttt
gttgatgaaattcatgagcgaggcatgaatgaagatttcttattgattgtgctgaaggat
ctgcttccacgccgtcgggatttgagattggttttaatgagtgctactctgaatgctgag
ctgttttcaagttattttggaggagctcctacaattcatattccgggctttacatatcca
gtaagagcacactttttagaagatgtactggaaatgactgggtataagttgacttccttc
aaccaaattgatgattatggccaagacaaactgtggaaaacacagaagcagttagtgcct
cgaaaaaggaaaaaccagattactgctctggttgaggatgctcttaataaatcaagcttt
gagagttacagtgccagggcacgtgattcactatcatgttggacacctgattgcattgga
tttaatttaatcgaggcagttttatgtcatatatgtcggaaggaacgacgaggtgctgtt
ttagtattcatgactgggtgggaggatataagctctttgagggatcaacttaaagcacat
ccacttttaggtgatcctaacagggttttgcttctaacatgccatgggtcaatgggaaca
tctgaacagaaactcatatttggaagaccacctcctaacattcgtaaaatagtccttgca
acaaatatggcagaagcaagtattacaatcaatgatgtagtttttgtggtggattgtgga
aaagcaaaagagacctcgtatgatgctttgaataatacaccttgtctgctaccttcttgg
atatcgcaagcatctgctcggcaaagaaggggtagggctggccgggtgctgccaggcgaa
tgttaccacctttaccccaaatgtgtttatcacgcttttgctgaatatcaacttcctgaa
ctgctcagaactcctttgaactctctttgcttgcaaattaaaagtttgcaggttgctagt
ataggggaattcttgtcagctgccttgcagccaccggaacccctagctgtccaaaatgcc
attggttttcttacttcaattggggcattagatgagaatgaaaatttgacaagtctcgga
aaatatttgtcaatacttcccgtggatcccaaactagggaaaatgctgattatgggtgct
gtgtttcattgctttgatcctgttcttacaatagtgtctggtctaagtgtcagggatcct
ttccttttgcctcaagacaaaaaagatttagcagggacagcaaaatctagattctctgca
aaagattacagtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgctgaa
agagaaggatcagcttatgaatattgctggagaaatttcctttctgctcaaacacttcag
gctatccattctcttcggaagcagtttaactacattttaagagatgctggattggtggat
gcggatgcaagcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatcata
tgttctggacttttccctggaatagcatctgtggtgcaccgagagacgtccatgtcattc
aaaacgatggatgatggccaggttctactatttgctaattctgtgaatgtgcgttaccaa
acaattccttatccctggttggtctttggtgagaaagtaagggtcaatactgtattcata
cgtgattccactggcgtatctgattcgatcctgatcctttttggtggtgcgttgaaccat
ggggtccaggctgggcatttgagaatgttggatggttatatcgacttcttcatggatcct
agtttggtggactgctatttgaagcttaaggaagaacttaatgagcttattcaaaagaag
cttgaagatcctagccttgatatccacaaggaagggaagtacctgatgcttgctgttcaa
gagctggtttccggagatcaatgtgaagggagatttgtatttggtcgtgacagcagaaag
ccgaaggaatctggtgataacagtagattcactaaagacggaaccaatcctaagagtttg
cttcaaactctgttgatgagagcaggacattctcctccaaaatacaaaacaaagcacctt
aagacgaacgagttcagagcactggtggagttcaagggcatgcaatttgtcgggaaacct
aagaaaaataagcagcttgcagaaagggatgctgctatagaagcactggcctggttgact
cacacctcagaaaaccatcgtgatgaagaagacaactccccccctgacatcactgacaac
atgctcaaacttctcgggaaacgtagaagatcaaaacggcagtctggttga
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