Pyrus x bretschneideri (Chinese white pear): 103952531
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Entry
103952531 CDS
T03446
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03013
Nucleocytoplasmic transport
pxb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103952531
03015 mRNA surveillance pathway
103952531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103952531
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103952531
mRNA cycle factors
P-body specific factors
103952531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
103952531
NCBI-ProteinID:
XP_009362399
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MKEPLVRTKVLIRHLPPSLSQSDLLHQIDHQLADRYNWLCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHMFVNEKGAQFKAIVEYAPSQRVPKPSTKKDGREGTIYKDPDYLE
FLKLIAMPVEHLPSAEIQLERKEAEQAGGAKEAPIVTPLMEYVRQKRAIGSGTQVSSVVR
KVRRRVGAASVSKRGSPSTKRVSEKKKYIIKDGTKQTSRRDKSTFNVVPRREDQLARSSG
KETLENEIGSVSGIPVISDSGKKKILLIKGKEREIPPAEGMSQLGSSPVSHAPKQNQRRE
VPGRMIRSILLNNEGRQSQTSTETQPQQKIQSLNSDVKQVSRPSNAKLGLNGQVSTNELN
SMSSEGNRKRATVDRFTKKDLHSTTSVSERQEKNTRNKDRPDRGVWAPLRRADSSRASDE
HLPSSGVQRPQLIYDSFEGHGEGKDDSSYGSRTGEVINPTSGRNSSHVDNGSHRHFGRHG
SAHNMKDDGSVNVGEGKPSKRGASVHGTPEQKQVWVQKSSSGS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagccattggtgaggacgaaggtgttaattcggcacttgcctccgtctctgtct
cagtccgatctcctccaccaaatcgaccaccagctcgccgaccgctacaactggctctgc
ttccgtccaggaaagaatagccagaagaaccagaggtattctcgggcctacatagatttc
aagcgacctgaagatgtttttgagtttgctgaattctttgatggacacatgtttgtcaat
gagaagggggctcaattcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
cctagtacgaaaaaggatggccgtgaagggaccatatataaagatcctgattatttggag
ttcctcaaacttattgcaatgcctgtcgagcatcttcctagtgcagaaatacagctggag
agaaaggaagcagaacaagctggtggtgcaaaagaagctcctattgttacacccctcatg
gagtatgttcgtcagaaacgagctattggaagtgggactcaggtttcatccgttgttcgg
aaggttagaagaagagtcggggctgcctctgttagcaaacgtggctcaccttctacaaaa
cgggtctctgagaagaaaaagtacataataaaggacggtactaaacagacaagtcgaagg
gacaagtccactttcaatgtggtacccaggcgagaggatcagttggctcgttcaagtgga
aaagaaacattagaaaatgaaattggttctgtttcaggaatccctgtgatttctgactct
ggaaagaagaaaatcttacttattaaaggaaaagagcgtgaaatacctcctgctgagggt
atgtcacaacttggaagttctcctgtttcacatgctccgaagcagaaccaaaggcgtgag
gttcctggaagaatgatcagaagcatacttttaaataatgagggacgccaaagtcaaact
tcaactgaaactcagcctcagcagaaaattcaaagtctgaattcagatgttaagcaagta
tctcgaccttccaatgcaaagttagggctgaatggtcaagtctctactaatgagcttaac
tcaatgagctctgaagggaatagaaagagggcaacagttgatagatttacaaaaaaggac
ctgcatagtacaactagtgttagtgagaggcaggaaaaaaatacacgaaacaaggataga
cctgatcgtggtgtttgggctcctcttcgtcgtgctgatagttcacgtgctagtgatgag
catttgccatcctccggggtacaacgccctcaattaatatatgattcctttgaaggtcat
ggagaagggaaggacgactcttcttatggaagcaggactggggaagttataaaccctaca
agtggacgtaatagttctcatgtagacaatggttcacatagacattttggtcgccatgga
agtgcccataatatgaaagatgacggttctgtaaatgtaggtgaggggaagccatctaaa
agaggtgcttctgttcatggtacgcctgagcagaaacaagtgtgggttcagaaatcatcc
tcaggttcttag
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