Pyrus x bretschneideri (Chinese white pear): 103953044
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Entry
103953044 CDS
T03446
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pxb03036
]
103953044
Chromosome and associated proteins [BR:
pxb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103953044
microRNA pathway
RISC loading complex
103953044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
103953044
NCBI-ProteinID:
XP_009363041
LinkDB
All DBs
Position
Unknown
AA seq
1653 aa
AA seq
DB search
MEVEESNSNPLGHAADDDQLPQSSNNFSPRRYQSEVYEVARRRNTIAVLETGSGKTMIAV
MLIRDYEGCQTNNLSGGAKKLIIFLAPTVHLVHQQFKVIKESTNYNVGEYYGALGVDSWT
MERWEKKMNEHDVLVMTPKIFLDALRKAFLSFEAVCLMIIDECHRATGNHPYTKIMKEFY
HKSGNKPKIFGLTASPVIKKGVSSTKDCEGQLSELESILDSQIYTIEDITEMEVCVPSAK
ETCRFYGQAWFLSSDLKEKMEASWSKVDASLSKLQVSVESNLSDMDDKIKTLQKRMSNDY
TKILYCLDELGLICTYEAVKICLENAPKCAKECELYREGSLQCRRFLEEVFGIIRESFLH
GSENFLDFGFDHLKAVDVGYISPKLNELVQIFHSFGRSREVRCLIFVDRIITAKVIERFM
KKVTSLSHFTVSYLTGSTTSVDSLAPKIQKETLELFCSGEVNLLFATDVVEEGIHVPSCS
CVVRFDLPKTVRSYVQSRGRARQDNSQFITMLERGNKKQRDQLYEIVRSEFLMTDTAIKR
DPESCSLKACPLEETNVYTVDSTGASVTADSSVSLVHKYCETLPRDKYFTAKPTFHISYL
GESYECKITLPPNAAFQTLVGPVCKKSSLAKQLVCLEACQQLHQMGALNDHLLPVVDVPD
VKRKEQASGAGTTKRKELHGTTCIRMLSGTWGEKLDAVIFQGYKFDFSCNIASELYSGFV
LLIESKLADDVGNLKLDLYLISKTVKASVSFCGEVHLDGEQMEKAKCFQEFFFNGLFGKL
YGTKSARKQRELSLEKETRKLWTPYCLYLLLPVETSNDSKDESWRINWAGINSCVSVVDF
LKRSLSLSSQCNVDTGNSVPRTVSSETECNSAGIVQFANCSVDVKNLKDTVVVAIHTGRI
YSVDEVMSNTSAESPFDVKKDNVSSQYTSFSEYFNKKYGIVLRYPGQPLLQLKQSHNPHN
LLVNFNGEGGGGKKLQSGVVIGKQIMYAHMPPELLVAIGIPGDVLKSCYLLPSLIHRLES
LMLASQLREEINYHSSSFRISSLFILEALTTLRCNDEFSMERLELLGDSVLKYTVSCHLF
LKYPKKHEGQLTSCRTLAICNSNLHRLGINRKLQGYIRDCAFDPCRWVSPGQISLRPIPC
NCGVETLEVPVNGKFQTEDPKVVVGKSCDKGHRWMCSKTISDCVEALIGAYYVAGGLPAA
IHMMKWLDIDVELEPSLVADAITMSSLHSYTLKANEIAIMESKLHYEFSTKGLLLEAITH
ASDQESGDGYCYERLEFLGDSVLDLLITRHLYHTHTDIDPGELTDLRSASVNNESFAQVA
VRRDLQQHLQHASMLLLSQITDYVKSLSEPDSGTTLQGTRGPKALGDMVESIAGAILIDT
KLNLDEVWRIFEPLLSPIVTPDKLVLPPLRELIELCDSLGYHRKEKCTNKGEMFHAELTV
QLKDVLLTGEGCDRTKKCAKGEAARRLLKKLEEKGFSFSKKRKLDADQVGDSTSLDINHK
VGDQVTVKDSSALVVYKRQKITEIPLAAQTTGVSPSVIDGKTSSPNNAAPVIEAINMKKG
GPRSALFQLCKNLQWPKPDFQITGTQSRTPLTFGESSTKYFNSFVAQVTLHIPNTGIIDC
SGDARPDKGSSEDSAAIVLFYELQRQGRVIIGG
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaagaatccaattccaacccactcggtcatgccgctgatgatgatcagtta
ccgcaatcttccaataacttcagtcccagacggtatcagtcggaggtgtatgaggtcgcg
aggcggaggaacacgatagcggtgctggagaccggttccgggaagacaatgatagctgtg
atgctcatcagagactacgaaggctgccaaactaataatttaagtggtggtgccaaaaaa
ttgattatctttttggcaccaactgttcatcttgttcaccagcaatttaaggttattaaa
gaaagcacaaattataacgtaggagagtattatggagcgttgggagttgattcgtggacc
atggagcgctgggaaaagaaaatgaatgagcatgatgtgcttgttatgacccccaagatt
tttttggatgccttaagaaaggcattcttgagttttgaagcagtatgcttgatgattatt
gatgagtgccatcgggctactggaaaccatccttatacaaagataatgaaggaattttat
cacaagtctggtaataagccaaagatttttggcttgacggcatcacctgttataaaaaaa
ggtgtctcatccacaaaggattgtgagggccagttatcagaacttgaaagcattttagat
tctcagatttatactattgaggacataacagagatggaagtatgtgtcccttctgcaaaa
gaaacttgtcgattttatggccaagcatggtttctgagttcggatttgaaagaaaagatg
gaagcctcttggtccaaggttgatgcttcattatcaaagttgcaggtatcagtagaaagt
aatctgagtgacatggatgataaaattaagacattgcagaaacgaatgtctaatgactac
acaaagatcttgtattgccttgacgaacttggtctcatatgtacttacgaggctgttaag
atctgtttagagaatgctccaaaatgcgcgaaggagtgtgaactttatagagagggctct
ttgcagtgcagacgttttcttgaggaagtgtttggtataattagggaatcgtttctgcat
ggttctgaaaatttcttggatttcgggtttgaccatttgaaggcagtagatgtgggctac
atatctccaaaattaaatgaacttgttcaaatttttcattcttttggaagatctagggaa
gttcggtgcctcatatttgttgatagaatcatcacggctaaagtgattgaaagattcatg
aagaaggttacttctttgtctcattttacggtttcctatttgactggaagcactacatca
gttgactctctggcgccgaaaatacaaaaggagacattggagttgttctgctctggggag
gtcaatttattatttgctaccgatgtagttgaggagggaattcatgttccgagctgctcc
tgtgtggtacgttttgacctgccaaagacagtgcgcagttatgtccagtcgaggggacgg
gctcggcaagataactctcagttcatcacaatgctggagaggggaaacaagaaacaaagg
gatcaactatatgagattgtcaggagtgagtttttgatgacagatacagctatcaaaaga
gatcctgaatcatgcagtttgaaagcatgtcctttggaggaaacaaatgtatatactgtg
gactccactggagcatcagtcactgcagattctagtgtcagtcttgtacataaatattgt
gaaacgctgcctagggataagtacttcactgcaaagccaacttttcatatctcatatctt
ggagagtcttatgagtgtaagatcacgttgcctccaaatgcggctttccaaacgttagtt
ggccctgtatgcaagaaatcttctttagcaaagcagcttgtctgcttggaagcgtgtcag
cagctacatcaaatgggtgccctgaatgaccatcttctcccagtcgttgatgtgcctgat
gtgaaaagaaaagagcaagcttctggtgcaggaactactaaaaggaaggaactacatggt
acaacttgcattcgtatgctatctggaacttggggggagaaacttgatgctgtcattttt
cagggatataagtttgacttctcctgtaacattgccagtgagttgtattctggatttgtt
cttctcattgagtcgaagcttgctgatgatgtggggaatctcaaattggacctttacctg
atttcgaaaacagtcaaggcttctgtttctttctgtggggaggttcatttagacggggaa
cagatggaaaaagcaaagtgctttcaggaatttttctttaatggattgtttgggaaattg
tatggaaccaaatcagctagaaaacagagagaactttcactggagaaagaaacaagaaaa
ctgtggaccccgtattgcttatatttgcttcttccagttgagacatcgaatgattcaaaa
gatgaatcttggagaataaattgggcagggatcaattcttgtgtttctgtggtagatttc
ttaaagagaagcttgtctttgagcagccagtgtaacgttgacacagggaactcagttcca
agaaccgtctcatctgagactgagtgcaacagtgcagggatagttcagtttgctaattgc
tctgttgatgtaaaaaatctcaaagatacggtggtggtggctatccatactggaagaatc
tactctgttgatgaggttatgagtaacacttctgctgagagtccttttgatgtaaagaaa
gacaatgtatcatcacaatatacttcattttctgagtacttcaacaaaaaatacgggatt
gtgctccgttatcctggtcagcctctgttgcaactgaaacaaagtcataatccgcacaac
cttcttgtgaactttaatggtgaaggtggtggtggtaagaaattgcaatctggcgttgtt
attggaaagcagattatgtatgctcacatgccacctgagcttctagtcgctattggtatc
ccgggagacgttctaaagtcatgttatttactaccatcgttgattcatcgcttggagtcc
ttgatgctagccagtcaacttagagaagagattaattatcattctagcagctttcggata
tcaagcttatttattctagaagcacttacaacactaagatgcaatgatgaattttctatg
gagcgcttggaattgctcggtgattcagttttaaaatatactgtgagctgccacctcttt
ctcaaatatcccaaaaagcatgaaggacaattaactagttgccgcaccctggctatttgt
aactcaaacctacatagattgggcataaatcgcaagttacagggatacatccgtgattgt
gcgtttgacccatgtcgttgggtttctccagggcagatttctctacgacccattccttgt
aattgtggagtggagactttagaagtacccgtaaatggaaaattccaaactgaagaccct
aaagttgtggttggaaagagctgtgataagggccatagatggatgtgttccaaaacaatc
tctgattgtgttgaagcccttataggagcatactatgttgctggtggattgcctgctgca
attcatatgatgaagtggctcgatattgatgtagaacttgagccttccttggttgctgat
gcaattactatgtcgtctcttcattcatacaccctgaaagctaatgagattgcaatcatg
gagtcaaagcttcactacgaattttctaccaagggtctcttactcgaggccataacacat
gcatctgatcaagaatcaggagatggctactgttatgagcgactagaatttctaggtgac
tctgtgttggacctgcttatcacaaggcatctctatcatacccacacagacattgatcca
ggcgagttaactgacttgcgttcagcttctgttaataatgaaagttttgcgcaagttgct
gttagacgtgatctccagcagcatctacaacatgcctctatgttacttctaagtcagata
acagattatgtgaagtctctttcagaacccgacagtggtaccacacttcaaggcacaagg
ggccctaaggctctcggagacatggtggaaagtattgcaggggcaattctaattgatacc
aaacttaaccttgatgaagtgtggagaatatttgaaccattattatctccaattgtgact
cctgacaaacttgtgctgcctccactacgcgagctgattgaactatgcgactcgcttggg
taccatagaaaagagaagtgtaccaataagggtgagatgtttcatgccgagcttactgta
cagctgaaagatgttctgttgactggagaggggtgcgatcggactaaaaaatgtgcaaaa
ggagaagcagctcgtcgtttacttaagaaacttgaggagaaaggtttttcattttccaag
aagaggaaacttgatgctgaccaagtaggtgattcaacttcccttgacatcaaccataag
gtcggtgaccaagtaactgtcaaagattcttcagcgttagtggtctataaaaggcaaaag
ataactgaaattcctctagctgcacagacaactggagtttctccttcagtaattgacggg
aaaacctctagccccaacaatgctgccccagtcattgaagcaatcaacatgaagaaagga
ggacctcgatctgctctttttcagctgtgcaagaacctgcagtggccaaagccggatttt
caaataaccggaactcagtcaagaactccactcacatttggtgaaagctcaaccaagtac
ttcaacagttttgtcgcacaagtaaccttgcacatacccaacaccggcatcattgactgc
tcaggagatgctagacccgataaggggagttcagaagattctgctgccatcgtcttgttt
tacgagcttcaacggcagggaagagtaataattggcgggtga
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