Pyrus x bretschneideri (Chinese white pear): 103953113
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Entry
103953113 CDS
T03446
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103953113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103953113
03009 Ribosome biogenesis [BR:
pxb03009
]
103953113
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103953113
Spliceosome [BR:
pxb03041
]
Complex A
U2 snRNP components
U2 related factors
103953113
Complex B
103953113
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103953113
Ribosome biogenesis [BR:
pxb03009
]
Eukaryotic type
90S particles
Helicases
103953113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
T2SSE
nSTAND3
AAA_7
ABC_tran
Flavi_DEAD
AAA_30
AAA_16
TniB
Motif
Other DBs
NCBI-GeneID:
103953113
NCBI-ProteinID:
XP_009363118
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISLAKMSKSNGDGGAAANQNAVSSMINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQALKASQSLILVGETGSGKTTQIPQFVLEAVDSESSDKRKKMM
VACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMT
DPLLERYSVIILDEAHERTLATDVLFGLLKEVLRNRPDLKVVVMSATLEAEKFQAYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPVKEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQQVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGYLTKLGEIMSEFPLDPQMSKMLVVSPEFSCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MARFNLKLCSTEFNSREYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVMDIRGEWLIDIAPHYYDLVNFPQCEAKHVLEKLYRKR
EDKDENKNRR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcttgttcgacgtggtggacgagacctccatc
tcattggcgaagatgagcaaatcgaacggcgacggcggagctgctgccaaccaaaacgct
gtgagcagtatgatcaatcggtggacgggaaagccgtactcgcagaggtactatgagatt
cttgagaagaggaagacgttgccggtttggcaccagaaagaggagttcttgcaggctctc
aaagccagccagtctctcattttggtcggtgagactggtagtggtaaaaccacgcagatt
cctcaatttgttttggaagctgttgattcagaatcttcagataaacgcaagaagatgatg
gttgcatgtacccaaccccgtagagtggctgcaatgtcagtatcccgtcgtgttgctgaa
gagatggatgtaaccattggagaagaggtcggttatagcatccgttttgaagactgcagc
agttccagaactgtgttgaagtatcttactgatggaatgcttttaagagaagcaatgact
gatccactattagaaagatacagcgtgataattcttgatgaagctcatgaaagaacttta
gcaacagatgttctatttgggctgttgaaggaagtgttgagaaacagacctgacttgaag
gtggtagtgatgagtgctacacttgaagctgaaaagtttcaggcctatttcagcggtgcg
ccactcatgaaagttcctggaaggcttcatccagttgaaattttttacactgaggaacct
gaaagggattatctggaagcagcgattcgaacagttgtgcagattcatatgtatgagacc
ccaggagatatacttgtttttctaacgggagaggaggagatagaagatgcatgccgcaaa
attaacaaggaaattggaaatctgggtgaccaggttggtcctgtgaaagtggtgcctctg
tattcaactctacctccagctatgcagcaaaaaatatttgatcctgctcctcctcctgta
aaagaaggtggaattcctggaaggaagattgtggtgtccacaaacattgcagaaacttct
ctgactattgatggaattgtttatgttattgatcctggatttgctaaacaacaagtctat
aacccaagagtgcgtgttgaatcattgttggtatcgccaatttccaaggcaagtgcacat
cagaggtcaggtcgtgctggaagaactcagccaggaaaatgtttcagactttatactgag
aaaagtttccagaatgatcttcaaccacaaacttatccagaaatattgagatccaacctt
gcaaatacagttcttactttgaagaaattaggaatagatgatctggttcattttgatttt
atggatccccctgctcccgagacactgatgagagccctagaggtcttgaattatttggga
gcattggatgatgatggttacttgaccaagctgggggagattatgagtgagttcccgttg
gatcctcagatgtcaaagatgcttgtagtcagccctgagttcagctgctcaaatgaaatt
ttgtcaatatctgccatgctttcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgctgacgaagcaaaagctaggttcgggcacattgatggagatcatctcacgctt
ctgaacgtgtatcatgcatacaagcaaaataatgaggatccgtcgtggtgctatgagaac
tttgtcaatcagagggcattgaagtccgcagacaatgtcaggcagcagctagtgcgcatt
atggcccgatttaacctcaagctatgcagtactgagttcaatagtcgtgaatactacatc
aacataagaaaggccatgctagctggatatttcatgcaggtggctcacctggaacgcact
ggccactatctgacagtgaaagataaccaagtggtacatttgcatccatcgaattgcttg
gatcacaagccagaatgggtgatttacaatgagtacgttttgacaagcaggaattttatc
cgtacagtgatggatattcgtggggagtggctaatcgatatagcaccccactactatgat
ttggtgaattttcctcagtgtgaggccaagcatgttcttgagaagctatacaggaagcgg
gaggacaaggatgagaacaaaaacagaagatga
DBGET
integrated database retrieval system
