Pyrus x bretschneideri (Chinese white pear): 103953433
Help
Entry
103953433 CDS
T03446
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03020
RNA polymerase
pxb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103953433
09124 Replication and repair
03420 Nucleotide excision repair
103953433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxb03021
]
103953433
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103953433
Enzymes [BR:
pxb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103953433
Transcription machinery [BR:
pxb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103953433
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103953433
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
103953433
NCBI-ProteinID:
XP_009363439
LinkDB
All DBs
Position
Unknown
AA seq
1820 aa
AA seq
DB search
MDIRFPFSPAEVAKVKCVQFGILSPDEIRQMSVVEIEHSETMLGGKPKTAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFIKTVLSVMRCVCFNCSKILVDEDDHK
FKQAMRIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQILGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFILFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSESESGNITPGDTLVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLDESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDKTFTYELDDEYWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPEPTSTIIDEDIDFVRAYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSSAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPGSPLTSGVSLDYSSSSPQY
SPSAGYSPSQPGYSPSSASQ
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggtttcccttctcgccagcggaggtggcgaaggtgaaatgcgtgcagttc
ggaattctcagccctgacgaaatcaggcaaatgtctgtggtggagattgagcacagtgag
actatgttgggaggcaagccgaagacggctggtttgagtgatcctcggctcggtacaatt
gaccggaagttgaaatgtgagacttgtacagccaacatggctgagtgccccggccatttt
gggcacctagagcttgcgaaaccaatgtttcacatcggtttcataaagactgtgttatct
gtaatgcgatgcgtttgcttcaattgctcgaaaattctagtcgatgaggacgaccacaag
tttaagcaagctatgagaataaaaaatccgaaaaacaggctgaaaaagattttggatgcc
tgcaaaaacaaatccaaatgtgaaggtggtgatgaaattgatgtccaaggccaagatact
gaagagcctgtaaagaaaagtcggggtggctgtggtgctcagcagcccaagctctctatt
gagggtatgaaaatgaatgcagagtacaaagcccaaaggaagaaaaatgatgaccaggaa
cagcttcctgaacctgtggaaaggaaacagacccttactgcggaaagggttcttagtgtt
ttaaagagaataagtgatgaagactcccaaatattggggttgaacccaaagtatgctcgg
ccagattggatgattctacaagttctgcccattcctccacaacctgtgagaccctctgta
atgatggacacctcatccaggagtgaggatgatttgactcatcaactggcgatgattatt
cgtcataatgacaatctgaggcggcaggaacgaaacggttctcctgctcatatcatttca
gagtttgcacaacttctgcaattccacattgccacttattttgacaatgagttgccagga
ctaccaagggctacgcagagatcagggaggcctattaaatcaatttgtagtagactgaag
gcaaaggaagggcgtataagaggcaacttaatggggaaacgtgttgacttttcagcacga
acagtgattactcccgatccaaacataaacattgatcaattaggagtgccatggagcatt
gctttgaatctcacttaccctgagactgtgactccatataatattgaaaggttgaaggag
cttgttgagtatggcccccatccaccgcccggtaaaactggtgcgaagtatataataagg
gatgatgggcaaaggcttgatcttcgttatttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggaacgtcatttgaatgatggagactttatcctcttcaatcgacaa
cctagtctccataaaatgtctatcatgggccacagaatcaagatcatgccatactcaaca
tttcgattgaatttgtctgtgacgtcgccgtataatgctgactttgacggggatgaaatg
aacatgcatgtgccccagtcctttgaaaccagggctgaagtattggagctcatgatggtg
ccaaaatgcatcgtctcacctcagtcaaatcgacctgtcatgggaattgtgcaggacaca
cttttaggttgtcgtaagatcactaagagggacaccttcatagagaaggatgttttcatg
aatatcttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttgaag
ccccggccactttggactggaaaacaggtgttcaatcttataataccaaaacaaataaat
ctccaaagaacttctgcatggcactcggaatcagagagtgggaacataactccaggggat
actcttgttagaatagaaaagggtgaattgctttctggaactctctgcaagaaggccctt
gggacttctacaggaagtcttattcatgttatatgggaagaggttggtccagatgcagcc
cgcaagtttctgggtcatacccaatggcttgtgaattactggctgctgcagaatgctttt
agcattggaattggagatacgattgctgatgcagccacaatggagaaaatcaatgaaaca
atttccaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatctaagcagctg
gaggctgaacctggacgaaccatgatggattcgtttgaaaacaaagtgaaccaggtgttg
aatagggctcgtgatgatgctggaagtagtgctcaaaagagtttagatgagagcaacaat
cttaaggccatggttacagcagggtccaaagggagttttatcaacatatcacagatgact
gcttgtgtgggacagcagaacgttgagggtaagcgaatcccgtacgggttcatagaccgg
acgttgccccactttactaaagatgattatggaccagaaagtcgtggatttgtagagaat
tcatacctgcgtggactaactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttatagatactgctgttaagacatctgagactgggtacatccaaaggagactggtg
aaggctatggaggatattatggtgaaatatgatggcacagtacgtaattctttgggtgat
gtcattcagtttctatatggggaagatgggatggatgctgtttggatagaatcacaaaag
ctggattctttgaaaatgaagaaaacagaatttgataagacttttacttatgagttggat
gatgaatattggaatcccgactacatgttgcacgaacatgttgaggatctcaaaacgatt
agagagttccgtaatgtctttgatgcagaagttcagaaacttgaaacagatagattacaa
cttggaacagagattgcagtcacaggtgataattcttggccactgcctgttaacttgaag
aggcttatttggaatgcacaaaaaacctttaagattgacttccgaaggacttctgatatg
cacccgatggaaattgtggaagctattgataagctgcaggagagactgaaagttgttcct
ggtgatgacttgttgagtgtcgaagcgcagaagaatgcaacattgtttttcaacatttta
cttcgcagcactttcgcaagcaaacgggtgttggatgagtacaggcttactcgtgaagca
tttgagtgggttattggggagatagaatcacgcttcctgcaatcgcttgtagcacctggg
gaaatgattggctgtgttgctgcacagtctattggagaacctgccactcagatgacactg
aatactttccactacgcaggtgtgagtgcaaagaatgttaccctaggtgtccccaggttg
agggaaattattaatgtagccaagagaatcaaaacgccatccctgtctgtctacttaaag
cctgaagctaataaaacgaaggagagggcgaagaatgtgcagtgtgctttggaatacacc
actttgcgaagtgtaactcaagctacagaagtatggtacgatccagaacccacaagcaca
ataattgatgaggatattgattttgtgagagcttactatgaaatgccagatgaagaagtt
aatcctgataaaatttcaccttggttgcttcgcatcgagttgaatcgtgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagattaaccttgaatttgatgatgat
ttaacttgtatcttcaatgatgacaatgcagaaaaattgatccttcgtatccgtatcatg
aatgctgaagctccaaaaggggagatggttgatgaatctgctgaagatgatgtttttctg
aagaagattgagagtaacatgctgacagagatggctcttcgtggtatcccagatattaac
aaggtgttcattaaacatggtaaagttaacaagttcgatccaaatgaagggtttaaagcg
gagcaagagtggatgctggatacggaaggggttaatctcttggctgttctgtgccatgat
gatgttgatgctaggcgcacaactagtaatcatttgattgaaattctggaaattctcgga
attgaggcagttcgtcggtcattgttggatgagttgagggttgttatatcgtttgatggg
tcctatgttaattataggcatctcgctatcctttgtgacacaatgacgtaccgtgggcac
ttaatggcaataacccgtcatggcattaatagaaatgacactggtcctatgatgaggtgc
tcctttgaagagactgttgatattcttcttgatgctgcagtgttcgcagagacggattat
ttaagaggcgtgacagaaaatataatgttagggcaacttgcaccaattgggacgggagat
tgtgccctgtatctcaatgatgagatgctgaagaacgccatcgaactccagctgcccagt
tacatggatggtcttgattttggtatgacaccgtctcgttctccagtgtcaggaacacca
tatcacgagggcatgatgtcccctaattatttgctgagcccaaatcttcggctgtcacca
atttcggatgctcagttttctccttatgttggaggaatggcattctctcctacttcctct
ccaggctacagcccatcatcccctggatacagcccttcctcccctggatacagccccact
tctcctggctacagtcccacctctccagggtatagccccacttctcctgggtacagtccc
acctctccgacatatagtcctagttctcccggctatagtcccaccagtccagcttactct
cctacaagtccatcatactcgccaacctctcccagctacagccccacctctccaagctac
agccccacctcaccaagctacagccctacttcccctgcttacagccccacttcccctgct
tacagccccacttcccccgcatatagccctacttcgccatcttacagtcccacgtctcct
tcctacagcccaacttcgccatcctacagcccaacttcaccttcctacagcccaacttct
ccttcctacagtcccacatctccatcctacagccctacctcgccagcctacagcccaact
tctcctggttacagcccaacctcgcctagttatagtccaacctcgcccagttacagccct
acatctccaagctataatcctcagtctgccaagtacagtccatcatcagcctactctcca
agcagtccaagattgtcaccatctagtccatacagtcctacctctccgaactacagccca
acctcaccatcatattcccctacatctccatcttactctcccgcaagccccacatacagt
cccggcagcccattgacttctggagtgagcctagactatagctcgagttcccctcagtat
agtccaagtgctggatactcacccagtcaacctggttactcgccatcatctgctagccag
tag
DBGET
integrated database retrieval system
