Pyrus x bretschneideri (Chinese white pear): 103953704
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Entry
103953704 CDS
T03446
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103953704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxb03021
]
103953704
03036 Chromosome and associated proteins [BR:
pxb03036
]
103953704
Transcription machinery [BR:
pxb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103953704
Coactivators
SAGA/TFTC/STAGA complex
103953704
Chromosome and associated proteins [BR:
pxb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103953704
STAGA complex
103953704
TFTC complex
103953704
SAGA complex
103953704
SLIK complex
103953704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_Nup120_160
WD40_like
PALB2_WD40
LisH
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
103953704
NCBI-ProteinID:
XP_018504508
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MAEAVDEESVRKFVAAYLKKKGFKQTENAFQDELNKNNNSSSSPISFNSKLDPNVSKHIL
SFSQYEEGPAQYQDAYAKLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEART
FFNSFRENHEMMHQRDLQKLEGVLSPSHLEEMEFAHSLRQRKVNIKICQYSYELLLQFLH
KSQSATVLGIINEHINFQVSPGQPSSISDDAEAVTLTGSSLDSANQINQKEIHWGLLEDS
LEERLDKAEALDSEKAEGESKEGDRNENKKKLSEGAKQGASNKKLKKDKAAGAAKSARPE
ATPVTAVPRVKPELTLPVIHTEVEQSILEDLXNHVQLSSAALPSVSFYTFINTHNGINCS
SISHDGSMVAGRFSDSSLKVWDVAKIGQQSLDSLQVENGTTTSSEQVLSNGGKNXYTLFQ
GHSGPVYSATFNPLGDFILSSSADSTVRLWSTKLNANLVCYKGHNYPVWDVRFSPVGHYF
ASASHDRTARIWSMDRMQPLRLMAGHLSDVDCVQWHVNCNYVATGSSDKTVRLWDVQTGE
CVRIFIGYRSMVLSLAMSPDGHYMASGDEDGAIMMWDLSSGRCVTFLTGHTSCVWTLDFS
GDGSLLASGSADCTVKLWDVTASTKLPRTEENKSGNTSRLRXLKTLPTKSTPVHSLRFSR
RNLLFASGVLSKTV
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcagtggacgaggagagcgtgcggaagttcgtggcggcttacttgaagaag
aaaggcttcaagcagacggagaacgcttttcaagacgaactaaacaagaataacaacagc
tcttcgtccccgatctctttcaattccaaattggaccccaacgtctccaagcacatccta
tcattctctcaatatgaggaaggtccagcacagtaccaagatgcatatgccaagttgagg
tcgtggacttacagttcactagatttgtacaggcatgagttgcttcgtgttctctatcca
gtatttattcattgtttcatggatctggttgctaaaggtcatattcaagaagctcggaca
tttttcaacagcttccgtgaaaaccacgaaatgatgcaccaacgagatctacaaaagttg
gaaggcgttctttctccctctcatttggaggagatggaattcgctcattctcttaggcag
agaaaagtcaacataaagatatgccagtactcgtatgagcttctgctgcagtttctacac
aagtcgcagtctgccacagtgcttgggattatcaatgagcatattaacttccaagtttct
cctggacaacccagctcaatttctgatgatgctgaggctgtaacacttaccggaagtagc
ctggattcagccaatcagataaaccagaaggaaatacattgggggttgctcgaagattcc
ttggaagaacgcttggacaaggctgaggccttagactctgaaaaggcagaaggagaaagc
aaagaaggggacaggaatgagaataagaaaaaattaagtgaaggagctaaacagggggct
tcgaacaaaaagttgaaaaaggacaaggctgctggtgcagcgaaaagcgcacgccctgag
gcaacccctgtaactgcagtaccaagagtcaaaccagagcttactttgccagtaattcac
acagaggttgaacagtctattcttgaagacttgtgaaaccatgtgcaattgagtagtgct
gcgctgccatctgtcagcttttatacattcatcaacacgcacaatgggataaactgttcg
tctatatcccatgatggatccatggttgctggtagattttcagactcgtcgctgaaggta
tgggatgtggcaaagattgggcaacaaagccttgattctttgcaggttgagaatggtacc
accacttcaagtgaacaagttctgtcaaatggtgggaaaaacncatatactttgtttcag
ggtcattcagggccagtttattcagctactttcaatccccttggggattttatactttcc
tcttcagcagactcaactgttcggttgtggagcacaaaactaaatgcaaatcttgtttgc
tacaagggtcataattacccagtatgggatgttcggtttagccctgtaggtcattatttt
gccagtgcttcccatgatcgaacagcaaggatatggtctatggacagaatgcagcctttg
aggttaatggccggacacttatctgatgttgattgtgtgcaatggcatgtcaactgcaac
tacgttgccactggttcgagtgacaaaacagttcgattgtgggatgtacagactggagag
tgtgtccgaatatttattggttacaggagtatggttttgtctctggcaatgtcacctgac
ggccattacatggcttctggtgatgaagatggagcaatcatgatgtgggacctttcaagt
ggccgctgcgttacatttttgacgggtcacacctcatgtgtatggacacttgatttcagt
ggggacggttcgcttcttgcttctggatctgccgattgcactgtaaaactatgggacgta
actgcaagtacaaagttgccaagaactgaagaaaacaaaagcggaaataccagcagattg
agataattgaagactttgccgacgaagtctactcctgtccattcgttacggttttctcga
agaaaccttctatttgcttccggggttctctcaaaaactgtataa
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