Pyrus x bretschneideri (Chinese white pear): 103953822
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Entry
103953822 CDS
T03446
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103953822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxb03021
]
103953822
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103953822
Transcription machinery [BR:
pxb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103953822
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103953822
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103953822
NCBI-ProteinID:
XP_009363929
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MDSERLTLSRENPRIAFSPHASADGKAMSGTELAQKPQPPTPIVDRFRALLKQREEDLRV
SPDDEVSPPSTEEIVHLYEMVLSELIFNSKPIITDLTIIAGEQRDHGKGIADAICARILE
VPVEHKLPSLYLLDSIVKNIGREYAKFFSSRLPEVFCEAYRQVHPNQHPAMRHLFGTWSA
VFPPSVLRRIEEQLQFSPQVNQQSSGLAPLRTSESPRPTHGIHVNPKYLRQLDSSTVDGV
GPQRLNSTGSMSHSPFAMGSNQLHPPSTARLARSSSPSNIGLDGSLPSAVDEYEAEQSPK
RFVERASPSHSVFDYRLGGAMGKDEESNEWRRNRYLDGSQKRYETSAAYNGVEHQNPRAL
IDAYGKDSADRSLNNKPLLVGRLGLNGIDRKATPMSWQNTEEEEFDWEDVAPNLADHGRG
NDFLASTVSPSRSYRASLGTQNASSLEPDVRSTWSSQAHPPSAEQSSIIAEDPVPPLGFG
RGSSGAMSRFQSETNHNLGSRYPQDAWNMPFHLSQPLQNPLNANGRGGNIQTPFVTGGIY
SGGGKISAFSDKLRDIDTQLHGPIASRMGSSSVDSVTADSRSGMPLSMGLRPPVNVHNSH
PPPVHSVFAMQNQRNPCGSINYSNTVKNQGPYNPLYMPEQQLDGYENKESRSTKSTRMPQ
YRPLQPQYRPRQEVQENIFPSAETQVTPYLGVPPLNHGYALRGPVPRQHLGITIPYNPNG
TSQFPLPPLPPGPPPPSQGIPSVQNPGLVVSSNQSGNAYSGLISSLMAQGLISLTNQSPV
QDSVGVEFNADLLKVRHESVISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSK
NRKQKPSRKWFVNTSMWLTGAEALGTEAVPGFLPAETVVEKKSDEEMAVPADEDQNSCAL
CGETFDEFYSDETEEWMYKDAVYLNAPDGATGGMDRSQLGPIVHAKCRSESSVAPPEGFG
QDQGGIIEEGSQRKRLRI
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggactcggaaaggctcacactttcccgagagaaccctagaatcgctttttccccgcac
gcctccgccgacggaaaggccatgtccggtactgagttagctcagaagccccagcctccg
actccgatagtcgaccgattcagggctctgctcaagcagcgggaggaggacctgagggtt
tcgcccgacgacgaggtgtcgccgcccagcactgaggaaatcgtccacctttacgagatg
gtgttgtcggaacttatctttaattcgaagcccatcattaccgatctcaccatcatcgcc
ggcgagcagagagaccatggaaagggcattgctgacgccatctgcgcccggattctcgag
gtcccggtcgagcataaactgccttcactgtatcttttagacagtattgtcaagaatatt
ggccgagaatatgcaaagtttttctcttcccgtcttcctgaggtcttttgcgaggcatac
aggcaagtacaccctaatcagcatcctgccatgcggcacctctttggcacttggtcagca
gtgtttccaccctcagttcttcgcaggattgaagagcaactgcaattttctccgcaagta
aaccaacaatcatcaggcttagcacctttgaggacttctgaatctcctcgaccaactcat
ggcatccatgtcaatccaaaatatttacgtcagttggacagctcaactgtggatggtgtt
ggaccccaaagattaaactcaacaggaagtatgagtcattcaccttttgccatggggtcc
aatcagttgcacccaccttcaactgctaggcttgcaagatcatcttcgccttcaaatatt
gggcttgatgggtctttgccatcagcagttgatgaatatgaagcagaacagtctccaaaa
aggtttgttgagagggcttctccatctcattctgtgtttgattatagacttggcggagca
atgggtaaagatgaggagtccaatgaatggcggagaaatcgctatcttgatggcagtcag
aagcggtatgagacttctgctgcatataatggagtcgagcatcagaacccaagagcttta
attgacgcatatgggaaagatagtgcggatagaagtttaaacaataagcctctgctagtt
gggcggctgggcctgaacggtatagatcgtaaggcaactccaatgtcatggcagaatact
gaagaggaagagtttgattgggaagatgtggccccaaatttagcagaccatggtaggggt
aacgatttcttggcctcaactgtatcgccttctagaagctacagggcaagccttggaaca
caaaatgcaagctccttggagccagatgttaggagtacttggtctagtcaggcacatcca
ccatcagccgaacagtcctctattatagctgaagatccagttcccccacttggtttcggt
cgtggatcatcgggtgctatgtctcgatttcagtctgagacaaatcataatctgggttct
cgctaccctcaagacgcctggaatatgccttttcatctctcgcagcctttgcagaatccc
cttaatgccaatggaagaggagggaatattcagacgccctttgtgacaggcggtatatat
tcaggtggtgggaaaatatcggcctttagtgacaagcttcgagatattgatacacaactt
catgggcccattgcatcaagaatgggttcctctagtgttgactctgttactgctgactcg
agatctgggatgccattgtcaatgggtttaaggcctccagtaaatgtgcataattctcac
cctcctcctgtgcactcagtttttgcaatgcagaaccagaggaatccgtgtggttcaata
aattatagcaatactgtaaaaaatcaaggcccatataatcctttatacatgccggagcag
cagttagatggctacgaaaacaaggagtcgaggtcaacaaagtcaactcggatgccacaa
tatcgtcccttacaaccacagtatcgtccacgtcaggaggtacaggagaatatttttccg
tctgcagaaactcaggtgacaccttatttaggggtaccgcccttaaatcacggatacgct
ttgcgaggtcccgtacctcgtcaacatttgggcataacaatcccctataacccaaatggc
acttcgcagttccccttgccacctctaccaccaggcccccctcctccctcgcaaggcata
ccttctgtccaaaaccctggtttagttgtctctagcaaccagtccgggaatgcatattct
ggtttgattagttctctcatggctcaaggtttgatctcattgacaaatcaaagccctgtc
caggattctgtaggagtcgagtttaatgccgaccttctcaaggtgcgtcatgaatctgta
ataagtgccctatatggtgatctccctagacaatgcacaacctgtggccttaggttcaag
tgccaagaagagcacagtagtcatatggattggcatgtgacaaagaatcgtatgtctaaa
aaccgcaagcagaagccctctcgcaaatggtttgtaaatacaagcatgtggctcactggt
gcagaggcattgggtaccgaggcagtccctggatttttgcctgctgagaccgtagtagaa
aagaagagtgatgaagaaatggctgttcctgccgatgaggatcagaattcgtgtgcatta
tgtggagagacttttgatgaattttatagtgacgagacagaggaatggatgtataaagat
gctgtgtacttgaatgcacctgacggagcaacaggaggcatggataggtcacagttaggt
cctattgtgcatgctaaatgcagatccgagtcaagtgtggccccccctgaaggttttgga
caagatcaagggggaattattgaagagggtagtcaaagaaaacgattgcggatttaa
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