Pyrus x bretschneideri (Chinese white pear): 103956355
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Entry
103956355 CDS
T03446
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103956355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pxb04131
]
103956355
Membrane trafficking [BR:
pxb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103956355
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
TPR_VPS8_2
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40
WDR55
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_THOC3
DUF7906
Beta-prop_LRRK2
Beta-prop_Aladin
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103956355
NCBI-ProteinID:
XP_009366595
LinkDB
All DBs
Position
Unknown
AA seq
1930 aa
AA seq
DB search
MTKKLTRFETQLTMELDLDSFLNSHLSLSDEDDDDDLSSVPHRTIDEILNDTDSSASSSP
SSSSIYRLNSDPKPPEPPNDAVSVPVVKSEDERAVRPRSNLYSRVKSGDLSEDPAGRVPK
PSPWLLGGMRTNAKPGAALAAAAAASRSMPTPHAAAIKSRRSTVSGVIQKVLESSELDEK
SEVSSNSTGDTTAIGPEVLRTKSNELQVDFGGELLREGGVFESESKLEQTFRVDQSQVDE
ASAGHAVEEEKNVSSFDENLTNLDANDVKDTEFSKNVEVVEECKQEIQYLDDNSPCSKES
DSEDNDGGGGGKDDGDDGGGKESEDNNGDIGNDSDIGDDDELGSITQLVEERIGELENRR
ISKKSEKKLRKPLEIAEELEKKQASNALHWEEGAAAQPMRLEGVRRGSTTLGYFNVDANN
PITRTLSSPALRRDHGSPQVLAVHNNYIAIGMGRGSILVIPSKYSAHTADSMDAKMLILG
LQGERSYAAVTSMCFNQQGDLLLAGYADGHITVWDVQRASAAKIITGEHTAPVVHTLFLG
QDSQVTRQFKAVTGDSKGLVLLHSSSVVPLLNRFSIKTQCLLDGQNTGTVLSASPLLFDE
FCGGASLSSQGSGVVSGSSIGGMMGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHHTVLVV
RLTPTLEVYARLSKPDGVREGSMPCTAWKCTIQSHSSPASSENMPAEVVERVSLLALAWD
RKVLVAKLVKSELKVYGKWSLESAAIGVAWLDDQMLVVLTVTGQLCLFAKDGTVIHQTSF
SVDGFGGDDLIAYHTHFINIFGNPEKAYHNCVAVRGASVYVLGPMHLIVSRLLPWKERIQ
VLRGAGDWMGALNMAMTIYDGQAHGVVDLPRTLVAVQETIMSYLVELLLSYVEEVFSYIS
VAFCNQIGKRDQADDVNSKSSSMHSEIKEQYTRVGGVAVEFCVHIKRTDILFDEIFSKFV
AVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSRTGWLQRVEQCVLHMDISSLDFN
QVVRLCREHGLYSALVYLFNKGLDDFRSPLEELLVVLRNSQREGATVLGYRMLVYLKYCF
SGLAFPPGQGTIPPSRLPSLRTELLQFLLEGSDAPNSRSVSSVLPGGEYINLYLLLELDT
EATLDVLRCAFVEDEISKSDFSSHDSDMQDGNNLMAQNKNSMVQNTVDTLIRIISKDSSQ
TDGSPSNDDTGSVVVWPSKKDIDHLFEFIAYYVACGRATVSKSVLSQILEYLTSDNNFPP
CVSGDSITSKRREKQVLGLLEVVPEIDWDSSYVLQLCEKAQFYQVCGLIHTSRHQYLAAL
DCYMKDVEEPIHAFSFINKTLLQLTDKECAAFRSEIISRIPELFYLNREGTFFLVIDHFT
IEEGSHILSKLRSHPKSLFLYLKTVIEVHLSGTLDFSSLRKDDLVRVKDQSKAVEAYLER
ISDFPKLLRSNPVNVTDDMIELYLELLCQYERNSVLKFLETFDSYRVEHCLRLCQKYGIT
DAASFLLERVGDVGSALLLTLSTLSDKFMKLDTAVASLASINSARTEHFSNALKLEEVND
INSILHACIGLCQRNTHRLNPDESEVLWFRLLDSFCEPLTDSFDAGTVSKGEDVKTTVAK
SLDSEEDEMAFIIKWRISKLHKGFHILRKLFSRFIKEIVEGMIGYVRLPTIMSKLLSDNG
NQEFGDFKFTILGMLSTYGFERRILDTAKSLIEDDTFYTMSILKKGASHGYAPRSQICCL
CDCLLDKNSSSYIRIFNCGHATHLQCEALENGASSSSSSSGCPVCMPKKKSQRSRSKSVL
PEKSLVKEFLSRTQQTYGTTSHTHESSASENTYGLQQISRFDILTNLQRDRGLVEIENMP
QLKLAPPAVYHEKVQKGTVLSPAESSTDLSRIGQQSKTKQLRDLKVRGSSLRLPLKSNIF
GNGKEKTSKR
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaagctcactcgcttcgaaacgcaactcaccatggaactcgaccttgactcg
ttcctcaattcgcacctctccctctctgacgaagacgacgacgacgaccttagctccgtc
ccccaccgcacgatcgacgaaatcctcaacgacaccgattcgtccgcctcatcgtccccg
tcctcctcctctatctaccgcctcaattccgatcccaaaccaccggaaccgcccaacgac
gccgtatcggtccccgtcgttaagtccgaggatgaaagggcggtccggccgaggtccaat
ctgtacagtcgggtcaagtccggggatttatcggaggatccggccgggagggttccgaag
ccgtctccatggttgctcggaggcatgagaacgaatgcgaagcccggggcggccctggct
gcagctgcggcggcctcgaggtcgatgccaacgccgcacgccgcggcaatcaagtcgagg
aggagcaccgtgagcggagttatccagaaggtacttgaaagttcggaactggatgaaaaa
tctgaggtgagttccaattctactggtgatacgactgcaattggtccggaagtgcttagg
acaaaatcaaacgaattacaagtggattttgggggtgaattgttgagagaaggcggggtt
tttgagagcgaaagcaagttagagcagacttttcgagttgatcaatctcaagttgatgag
gcgagtgctgggcatgctgtggaagaagagaagaatgtaagtagttttgatgagaatttg
acaaatttagacgcaaatgatgttaaagatacggaatttagtaagaatgttgaggtcgta
gaggaatgtaaacaagaaattcaatacttagatgataacagtccctgttcgaaagagagt
gatagtgaggataatgatggtggtggtggtggcaaggatgatggtgatgatggtggtggt
aaggagtctgaggataacaacggcgatattggtaacgatagcgatattggtgatgacgat
gaattgggttcaatcactcaactcgtggaggagagaattggggaattggagaacaggagg
attagtaaaaaatctgaaaagaagttgcgcaagccacttgaaatcgctgaagagctagag
aagaagcaagcttctaatgctttgcattgggaagagggtgccgctgctcaacccatgagg
cttgagggtgttcggagaggctccaccacattaggatacttcaatgtcgatgctaacaat
cccattactcggaccctttcatctccggcgttaaggcgtgatcatggctcaccgcaagtc
ttggcagttcacaataattacattgcaataggaatgggaagagggtctattcttgttatt
cctagcaagtactctgctcataccgctgacagcatggatgcaaagatgctaattcttggg
ttgcaaggagaacggtcttatgctgctgtaacttctatgtgcttcaatcagcaaggggac
ttgctcttagctggttatgctgatggtcacattacagtttgggatgtgcagagggcatcg
gctgccaaaataattactggagaacatacagctccagttgtacatacgttgtttttgggg
caggattctcaggttacacgtcaattcaaggcagttaccggtgatagtaagggtctggta
ttattacattcttcctcggtggttcccctgcttaataggttctcaattaaaacacagtgc
cttcttgatggacaaaatacgggcacagtgctgtcagcttcaccactcctgtttgatgaa
ttctgtggaggggcttcactgtcttctcagggaagtggggtggtttcaggcagcagtatt
ggtggtatgatggggggtgtggtcggtggagatgcaggttggaaactcttcaatgaggga
tcttctttggtcgaagaaggtgtggtcgtgtttgtcacccatcacactgttctggtggta
agactaactcccactttggaagtgtatgctcgactttccaaaccagatggggttcgggag
ggttctatgccttgtactgcttggaaatgtacaatacagtcacacagttcacctgctagt
agcgaaaatatgcctgctgaagtagttgaaagagtttcgttacttgcacttgcttgggat
cgaaaagttctggtggcaaagttggtcaaatcagagctgaaagtatatgggaaatggtct
cttgaaagtgcagccataggtgtggcttggctagatgatcagatgctggtggttctcacg
gtgactggacaactttgtttgtttgcaaaggatggaactgtgattcaccaaacaagtttt
tctgttgatggttttggaggggatgatctcattgcttatcatacacacttcattaatata
tttggaaatcctgaaaaagcgtatcacaattgtgtagctgtaagaggagcttcagtatat
gtactcggaccaatgcatcttattgtttcccgacttctcccatggaaagaacgaattcag
gttttacggggagcaggtgattggatgggtgccttgaacatggcaatgacaatttatgat
ggtcaagctcatggtgttgttgaccttcctagaactctggttgctgtacaggagaccata
atgtcctacctggttgagttgctattgtcatatgtagaggaagtattttcatatatctca
gtagcgttctgcaaccaaattggaaaaagggatcaagctgatgacgtaaacagcaagagt
agttctatgcactctgaaataaaagagcaatacacccgtgttggtggagttgcagttgaa
ttctgtgtccatatcaaaaggactgacatactttttgatgaaatcttctccaagtttgta
gctgttcaacagagagacacatttttggagctgttggagccttatatattgaaggacatg
cttggttctcttccacctgagattatgcaagcactggtagagcattatagccgcacaggg
tggttacagcgcgttgaacaatgtgtccttcacatggatatttcatccttggatttcaat
caggttgttaggttatgcagggagcacgggctgtatagtgctctggtgtatctcttcaat
aaaggattggatgatttcaggtcacccttagaggagctgttggtggtcttgcgaaatagt
caaagagaaggtgctactgtccttggttacaggatgctggtttatttaaagtactgcttt
tcaggccttgcttttccaccaggacagggaacaattcccccctcacgcttgccatctctg
agaacagaacttctgcaatttttgttggagggttctgatgcccctaattcaagatcagtc
tcaagtgtattgccaggaggagaatatattaacctgtatcttctgttagagctagatact
gaagctactttggacgttctgagatgtgctttcgtagaagatgaaatctcaaaatctgac
ttttcttctcatgattcagatatgcaggatgggaacaatttaatggctcaaaataaaaat
tcaatggttcagaacacagtagatactcttattcgcattattagtaaggacagttctcaa
acagatggatctcctagcaatgatgacactggatcagtagtagtgtggccttcaaagaaa
gacatagatcatctatttgagtttattgcatactatgttgcatgtggaagagccactgtt
tcgaaaagtgtattgtctcagattttggagtatttgacctcagataataactttccacca
tgtgtttccggagatagcataacttcaaaaagaagagagaagcaggttctgggacttctt
gaggtagtgcctgagatcgattgggattcatcttatgtgttacagctatgcgagaaagcg
caattttaccaggtttgtggcctaattcatactagcagacatcagtatcttgctgctttg
gattgctacatgaaagatgtagaagaacccattcatgccttctcctttatcaacaaaaca
ttattacagctgactgacaaggaatgcgctgcttttcgatcagaaattatttctcgaatt
ccagagcttttttacttaaacagagagggcacattcttcttggttatcgatcattttact
attgaagaaggttctcatatcctctctaaacttcgttcccatccaaaaagtctgttcctt
tacttaaaaacagtgattgaggtccacttatccggcacgcttgacttctcaagtttaaga
aaagatgatcttgtgagggttaaagatcaatcgaaagcagttgaggcgtatctggaaagg
atctccgatttcccaaagcttttgcgtagtaatcctgttaatgtgactgatgatatgatt
gaactttatctggagctgttatgtcagtacgagcgcaattcagttctcaagttcttagag
acatttgatagctatcgtgtggaacactgtttacgcctgtgccagaaatatgggataaca
gatgctgcttctttcttgttggaaagggttggtgatgtcggcagtgctcttttacttaca
ctttccaccctcagtgacaaatttatgaagcttgatactgctgtggcaagtctggcgtca
attaattctgctcgtactgagcatttcagcaatgctttaaaattggaagaggtgaacgac
attaacagcatattgcatgcctgtattgggctgtgccaaaggaacacccatcgcttaaat
cctgatgaatcagaggtgctctggtttagattacttgactcgttttgtgagcctttaaca
gattcatttgatgctggaacggtatctaaaggagaagatgttaaaacgacggtggccaag
tcattggactcagaagaggatgagatggcttttataatcaagtggagaatctcaaagctc
cataaaggctttcatatattaagaaaactgttctctcggttcatcaaggagattgttgag
ggcatgataggatatgttcgccttccaactatcatgtccaaactcctctctgataatggc
aaccaagaatttggtgattttaaattcacaattttggggatgctgagcacatatggcttt
gaaagaagaattctggatactgccaagtccctgatagaagatgatacattctacactatg
agcatactcaagaaaggggcctcccatgggtacgcccctcgcagtcaaatatgttgttta
tgtgattgtcttcttgacaagaactcttctagctacattcgcattttcaattgcggtcat
gcaacgcatcttcaatgtgaagctttagagaatggcgcatcaagtagtagctcatcctct
ggatgccctgtttgtatgcctaagaagaagtctcagaggtctagaagcaaatcagtcctt
ccagagaagagtttggtgaaggagtttttgtcaagaacccaacaaacatacggaacaact
tcccacacacacgaaagcagtgcatcagagaatacgtacgggcttcagcaaatatcaagg
tttgatatcttgaccaatttgcaaagagaccgaggattagtcgagattgaaaacatgcct
caactaaagctcgcacctccggctgtgtatcatgagaaggttcagaaaggaactgttctt
tcaccggcagaaagcagcactgatctttcgagaatagggcaacaaagtaaaaccaagcaa
ctcagggacctaaaagtaagagggtcgtctctccggttacccttaaaatcaaacatattt
ggtaatggcaaggagaagaccagcaagcgatga
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integrated database retrieval system
