Pyrus x bretschneideri (Chinese white pear): 103956871
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Entry
103956871 CDS
T03446
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103956871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103956871
03009 Ribosome biogenesis [BR:
pxb03009
]
103956871
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103956871
Spliceosome [BR:
pxb03041
]
Complex A
U2 snRNP components
U2 related factors
103956871
Complex B
103956871
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103956871
Ribosome biogenesis [BR:
pxb03009
]
Eukaryotic type
90S particles
Helicases
103956871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
AAA_7
T2SSE
nSTAND3
ABC_tran
AAA_30
AAA_16
AAA_33
TniB
AAA_29
Motif
Other DBs
NCBI-GeneID:
103956871
NCBI-ProteinID:
XP_009367198
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDEASITSAKMNKSNGSGGAAANQNAMNSLINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQAFKASQSLILVGETGSGKTTQIPQFVLEAVHSESSDKRKKMM
VACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYSVIILDEAHERTLATDVLFGLLKEVLRNRPDLKVVVMSATLEAEKFQGYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPIKEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
RSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MARFNLKLCSTEFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLANFPQCEAKRVLEKLYRKR
EDKDENKNRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcttgttcgacgtggtggacgaggcttccatc
acatcggcgaagatgaacaaatcgaacggcagcggaggagctgctgccaaccaaaacgct
atgaacagtctgatcaatcggtggaccgggaagccgtactctcagaggtactatgagata
cttgagaagaggaagactttgcctgtttggcaccagaaagaggagttcttgcaagctttc
aaggccagccagtctctcattttggtcggtgaaacgggtagcggtaaaaccactcagatt
cctcaatttgttttggaagctgtccattcagaatcttcagataaacgcaagaagatgatg
gttgcgtgtacccaaccacgtagagtggctgcaatgtcagtatcccgtcgtgttgctgaa
gagatggatgtaaccattggagaagaggttggttatagcatccgttttgaagactgcagc
agtgccagaactgtgttaaagtatctcaccgatggaatgcttttaagagaagcaatgact
gatccacttttagaaagatacagcgtgataattcttgatgaagctcacgaaagaacttta
gcaacagatgttctatttgggcttttgaaggaagtgttgagaaacagacctgatttgaag
gtggttgtgatgagtgctacacttgaagctgaaaagtttcagggttatttcagtggtgcg
ccactcatgaaagttcctggaaggcttcatccagtggaaattttttacaccgaggaacct
gaaagggattatctggaagcagcgattcgaacagttgtgcagattcatatgtatgagacc
ccaggagatatacttgtttttctaacgggagaggaggagatagaagatgcatgccgcaaa
attaacaaggaaatcggaaatctgggtgaccaggttggtcctgtgaaagtggtgcctctg
tattcaactctacctccagctatgcagcagaaaatatttgatcctgctcctcctcccata
aaagaaggtggaattcctggaaggaagattgtggtgtcaacaaatattgcagaaacttct
ctgactattgatggaattgtttatgttattgatcccggatttgctaaacaaaaagtctat
aacccaagagtgcgtgttgaatccttgttggtatctccaatttccaaggcaagtgcacat
cagaggtcaggtcgtgctggaagaactcagccgggaaaatgtttcagactttatactgaa
agaagtttcaataacgatcttcaaccacaaacgtatccagaaattttgagatcaaacctt
gcaaatacagttcttactttgaagaaactaggaatagacgatctcgttcattttgatttt
atggatccccctgctcctgagacattgatgagagcactagaggtcttgaattatttggga
gcattggatgatgaaggtaacttgaccaagctaggggagattatgagtgagttcccgttg
gatcctcagatgtcaaagatgctggtagtcagccctgagttcaactgctcaaatgaaatt
ttgtcaatatctgccatgctttcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgctgacgaagcaaaagcgaggttcgggcacattgatggagatcatctcacgctt
ctgaatgtgtatcatgcatacaagcaaaataatgaggatccgtcatggtgctatgagaac
tttgtcaatcagagggcattgaagtctgcagacaacgtcaggcagcagctagtgcgcatt
atggcccggtttaacctcaagctatgcagtactgaattcaatagtcgtgactactacatc
aacataaggaaggccatgctagctggatatttcatgcaggtggctcatctggaacgtact
ggacactatctgacagtgaaagataaccaagtggtgcatttgcatccgtcgaattgcttg
gaccacaagccagaatgggttatctacaatgagtatgttttgacaagcaggaattttatc
cgtacagtgacagatgttcgtggggagtggttagtcgatatagcaccccactactatgac
ttggcgaattttccccagtgtgaggccaagcgtgttcttgagaagctatacaggaagcgg
gaggacaaggatgagaacaaaaaccgaaagtga
DBGET
integrated database retrieval system
