Pyrus x bretschneideri (Chinese white pear): 103959399
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Entry
103959399 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103959399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103959399
03041 Spliceosome [BR:
pxb03041
]
103959399
03009 Ribosome biogenesis [BR:
pxb03009
]
103959399
03016 Transfer RNA biogenesis [BR:
pxb03016
]
103959399
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103959399
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103959399
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103959399
Complex C
U4/U6.U5 tri-SnRNP related factors
103959399
Ribosome biogenesis [BR:
pxb03009
]
Eukaryotic type
Pre-60S particles
Helicases
103959399
Transfer RNA biogenesis [BR:
pxb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103959399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
103959399
NCBI-ProteinID:
XP_009370021
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MEESPTPAKRKEPEASEITETPTDESSLKRRHLTRTCVHEVAVPSDYASTKDESVYGTLS
NPVYNGEAAKTYQFTLDPFQQISVACLERKESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELSQEFEDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREENFVKLHDTFSKQKLGDGHRNNKA
SGRLAKGGTASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQDEKD
AVEQVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKA
LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIM
IDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQYEK
ALPGIGEKVSKLEQEAALLDASGEAEVAEYHKIKLDIAQLEKKMMSEITRPERVLYFLLP
GRLVKIREGGTDWGWGVVVNVVKKPSSGLGTLSSRAGGYIVDTLLHCSPGSSENSSQPKP
CPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPLEARQSILLAVQELGTRFPQGLP
KLNPVKDMGIEDPEIVELVNQIEDLEQKLYAHPLHKSQDANQIKCFQRKAEVDHEIQQLK
SKMRESQLQKFRDELKNRSRVLKKLGHIDAEGVVQLKGRAACLIDTGDELLVTELMFNGT
FNDLDHHQIAAIASCFIPVDKSNEQIQLRTELARPLQQLQESARRIAEIQHECKLDVNIE
EYVESTVRPFLMDVIYCWSKGASFAEVTQMTDIFEGSIIRAARRLDEFLNQLRTAAQAVG
EVALEEKFTGASESLRRGIMFANSLYL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccaacacctgcgaaacgaaaagaacctgaagcgtcagagatcacagaa
actcccacagatgaatcttccctgaagcgaaggcatttgactcgaacatgtgtgcatgag
gttgcagttcccagtgactatgcttcgaccaaggatgagtcggtttatggaaccctttcg
aatcctgtgtataatggcgaggcggccaagacataccaatttacccttgacccatttcag
cagatttctgtggcatgcttagaacggaaagagtcagttttagtctccgcccatacttca
gcaggtaagactgcagtcgcggagtatgcaattgccatggcttttagagacaagcagagg
gttatatatacttcgccattgaaggctttgagcaatcagaaatatagagagctcagccag
gagtttgaagatgttggattgatgactggagatgttacactctcacctaatgctagttgt
ttggttatgacaactgagatccttaggggaatgctttacaggggttccgaggttttaaag
gaagtcgcctgggttatcttcgatgaaattcactacatgaaggatcgtgaaagaggggtt
gtttgggaagagagtattatatttatgcctcctgctgttaaaatggtttttctttcagcc
acaatgtccaatgcgactgagtttgcagagtggatttgtaatttgcacaaacagccttgt
catgtggtgtacacagattttcgaccaactcctctgcagcattacgtttttccagtgggt
gggaacgggttgtatcttgtggtcgatgagaatgaacaattcagggaggaaaattttgtg
aagctacatgatactttctcaaagcagaaattgggtgatggtcacaggaataacaaggca
agtgggagacttgcaaaaggtgggactgcatctgggggttctgacatattcaaaattgtg
aagatgattatggaacggaaatttcagccagttataattttcagcttcagtagaagagag
tgtgaacaacatgcgatgtccatgtctaagcttgattttaacagccaagatgaaaaagat
gctgttgaacaggtttttcgtaatgcaatactctgcttaaacgaggaagacagggagttg
cctgctattgagttaatgctgccactccttcaacgaggaattgccgttcatcattctggc
cttctacctgttatcaaggaactggtagaacttcttttccaagaaggccttgtaaaagcc
ctttttgctactgagacatttgcaatgggcttaaacatgccagcaaaaactgttgttttc
acagctgttaagaagtgggatggtgatagtcatcgatatatcggatctggtgagtatatt
cagatgagtggaagggctgggcgtcgtggcaaagatgagcggggtatttgtatcataatg
attgatgaacagatggaaatgaacacactaaaggatatggttttgggtaaaccagctcct
ctagttagcactttcagactcagctattactcaattttgaatttgttgagccgtgcggaa
ggccaattcacagctgaacacgtgataaagaattcattccaccaatttcagtatgaaaag
gctttgcctggtataggggaaaaggtttcaaagcttgagcaggaagcggctttgcttgat
gcatcaggagaggctgaagttgctgagtatcataagataaaacttgatatagctcaactt
gagaagaaaatgatgtcagagataacgaggcctgaaagagttctgtattttcttcttcct
ggccgcctggtcaagattagggaaggtggtacagattggggctggggagttgtagttaat
gtggtaaaaaagccttcatccgggttaggcacactgtcctcgcgtgctggtgggtatata
gtggatactttgctccactgttctcctggttcaagtgagaacagttcacagccaaagcct
tgccctcctcgccctggagaaaagggtgaaatgcatgtagtccctgtacaattgcccctg
atttctgctctaagcaaactcagaatatctattccctctgatttgcggccgttagaggca
aggcaaagtattcttctagcagttcaggagctgggaactcgttttccacaaggtcttcca
aagctgaatcctgtaaaggatatgggcattgaagatcctgaaattgttgagttagtcaat
caaatagaggatcttgaacagaaattatacgcacatccactgcataagtctcaagatgcg
aaccagattaaatgctttcaaaggaaagcagaggtggatcatgaaattcaacaacttaag
tccaaaatgcgtgagtcccagcttcaaaaatttcgtgatgaacttaagaaccgttcacgg
gtcttgaagaagcttggtcacattgatgccgagggtgttgtccagttaaaggggcgggca
gcctgcttgatagacacaggagacgagctccttgttactgaactgatgtttaatggtaca
ttcaatgatttggatcatcatcaaattgcggcaatcgcaagttgttttattccagtagat
aaatcaaatgagcagatacaattgaggacggagcttgctagaccattacaacaactccaa
gagagtgctagaagaatagcagagatacaacatgaatgcaaattagatgtaaacattgaa
gagtacgtggaatcaacagtgcgaccattcttgatggatgtgatttattgttggtcaaag
ggtgcaagtttcgcagaggttacacaaatgacagatatatttgagggtagtatcatcaga
gctgctagaagacttgatgaatttttgaaccagttgcgtactgctgctcaggctgtggga
gaagttgctttggaagagaaattcactggagcaagcgaaagcctccggcgaggtatcatg
tttgcaaattccctgtatctgtag
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