Pyrus x bretschneideri (Chinese white pear): 103960245
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Entry
103960245 CDS
T03446
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103960245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103960245
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103960245
Spliceosome [BR:
pxb03041
]
Complex C
Other components
Step II factors
103960245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
Cas3-like_C_2
AAA_30
TsaE
Sigma54_activ_2
AAA_16
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
103960245
NCBI-ProteinID:
XP_018506148
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MAATDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEIGRSCETVDEFDARLKENG
AEMPDYFVRTLLTIIHAILPPKPKPEKDASKKDGASEGKKTKFKALAIADNRDRVKEIDK
EIEMETREKHTGGEERDGEREDDRRRGRDRYRDGDGDGDRDRDRDRDRDRDRDRHRGRER
DGRGRGRDRHDRDERRRDSHYNDHDGERGRHTDRYNKHKRDGYEENGIEREDGDDRRGNR
DRRNGPSKNLSDEPELYQVYKGRVSRVMDTGCFVQLNDLRGKEGLVHVSQMATRRISNAK
DVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKSSEEDAHGTNMSVSRDGPV
TRTGLSGIRIVEEDDVGPSRRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDDEADGMLY
QEEGAEEELEIEINEDEPAFLNGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERRE
VREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTIS
FGQRSKLSIQEQRQSLPIYKLKKELVQAVNENQVLVVIGETGSGKTTQVTQYLAEAGYTT
KGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLRE
ILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKKLLIRRPDLRLIVTSATLDAEKFSGYF
FDCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFA
CQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTID
GIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYR
NEMSPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDE
EGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQAD
QKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKY
KLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWV
IYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPN
SWRLSKRRA
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccgacgacggtctgaagaagttggagtacctttcgctggtctccaaagtc
tgttcagagctcgaaacgcatctagggtttggggacaaagttctggcggagttcatcacc
gaaatcggacggagctgtgagacggtggacgaattcgacgcccgattgaaggagaacggc
gcagagatgcccgactacttcgtccgtacacttctcactatcatccacgcaatcctccct
ccgaagccgaagccggagaaggacgcctcgaagaaagacggcgcttctgaaggtaagaaa
accaagtttaaggctttggctattgctgataatagagatagagttaaggagattgataag
gaaattgagatggagactagggagaagcacaccggcggagaggagcgggacggagagcgt
gaagacgataggcggaggggtagggatagatatagggatggagatggagatggagataga
gatagagatagagatagagatcgagatcgagatcgtgataggcatagaggtagggaaaga
gatgggagaggcaggggaagggataggcatgatagagatgagaggcgtagagattcacat
tataatgatcatgatggggaaagagggaggcatacagatcgatacaataagcataagaga
gatgggtatgaagagaatggaattgaaagagaagatggtgatgataggagaggtaatagg
gataggcggaatggccctagtaagaacctttccgatgaacccgaattgtaccaggtgtat
aagggtagggtttcgagagtgatggacaccggttgctttgttcagttaaatgatttgaga
gggaaggaaggtttggttcatgtttcacagatggcaactcggcgaattagtaatgctaag
gatgtggtgaagagggatcaggaagtttatgttaaggtgatctctgtttcgggtcagaag
ttgagcctttcaatgagggatgttgatcagcattctgggaaggatttgcttccgttgaag
aagagctcagaggaggatgctcatgggaccaacatgtcggtgtccagagacggacctgtg
actaggactggtctatctgggattaggattgtggaagaggatgatgttggtccatcccgc
cggccattgaagcgaatgagctcacctgagaagtgggaagccaaacagttaattgcctca
ggtgttttgggtgtgacagagtacccaatgtatgatgatgaagcagatgggatgctatat
caagaagagggagctgaggaagagcttgagattgagatcaatgaggatgagccggccttt
ttaaatgggcagaccaggtattctgtggatatgtcccctgtaaaaatctttaagaatcca
gaagggtctttgagtcgtgcagctgcacttcagtctgcactcattaaggagcgtagagaa
gtgcgagagcagcagcaaagaactatgttggattccatcccaaaggatctgaatcgtccc
tgggaagatccaatgccagagactggtgagaggcatcttgcccaggagcttagaggtgtt
ggtttgtctgcatatgatatgcctgagtggaagaaggatgcttttgggaaaaccatcagc
tttgggcagaggtctaagctatcaattcaggaacagaggcagagcttgcctatatacaag
ctgaagaaagaattggttcaggcggtgaatgagaatcaagtgctcgtcgtcattggtgag
actggttctggtaagacaacccaggtaacacagtatcttgcagaagcgggttacacgaca
aagggaaagattggatgtacacagccccgtagggttgctgcaatgtctgtagccaagagg
gtggctgaagagtttggttgtcgtttgggggaggaagttggatatgctattcgttttgag
gattgcactggaccagatactgtcatcaagtacatgaccgatggtatgcttcttagggag
attttgattgatgagaacctttcccaatactctgtggtcatgcttgatgaagctcatgag
aggacaatccacacagatgttctttttggattactgaagaagcttctgatccggagacca
gaccttcgtttgattgtcacctctgctactttggatgcagagaagttttcaggttatttc
ttcgactgtaacatatttactatccccgggagaacttttcctgttgagatactctacacc
aagcagccagaaagtgactaccttgatgcatctctaattactgtcctacaaatccactta
acagaacctgaaggtgacatccttcttttcttgactggacaagaagagattgattttgca
tgccagtctctttatgagaggatgaagggtcttggtaaaaatgttcctgagttaattatt
ctaccagtatatagtgcccttcctagtgaaatgcagtcaaggatatttgatcctgccccg
ccagggaagaggaaagtggttgtggctactaatattgctgaagcatcactgactattgat
gggatattttatgtcatcgatcctggatttgcaaagcaaaatgtttataacccaaagcag
gggttggattcgcttgtcattactccaatttcgcaagcatcagccaagcaacgagctggg
cgtgctggacgcacagggcctgggaaatgttaccgcctctacactgagagtgcataccgt
aatgagatgtcccctacttcaattccagaaatccagaggataaatcttgggatgactaca
cttacgatgaaagccatggggataaatgatctcctgtcttttgattttatggatcctcct
tcaccgcaagcactcatttctgccatggaacaactgtacagtttgggagcactggacgag
gaggggctgctgaccaaattgggtaggaagatggctgagtttcctcttgatccaccgtta
tctaagatgctactggctagtgtagaccttggatgtagtgatgagatcttgaccatcatt
gcaatgattcagacaggcaatatcttttacaggcctagggaaaaacaagcccaggctgat
cagaagagagctaagtttttccagccagagggagaccatctgactttacttgcagtctat
gaggcttggaaagctaagaatttctcaggtccatggtgttttgagaactttgttcagtct
cgatccttgaggagggcacaggatgtcagaaaacagcttctgagcatcatggacaagtat
aaattggacgtggtcagtgcaggaaagaattttacaaagatcaggaaggcaattacagca
ggtttcttcttccatggtgctagaaaggacccgcaggagggttatagaacccttgtcgag
aaccagccagtttatatccacccaagcagtgctctcttccagagacaaccagattgggtc
atctaccatgagctggttatgactacaaaggagtacatgcgtgaggtgacggtcgttgac
cccaaatggctagtagaactggcaccaaggttcttcaaagtatcagatcccacaaagatg
agtaagcgcaagcgtcaggaacgaattgaacccttatatgacagataccatgaacctaac
tcttggcgtcttagtaagcgtcgtgcttga
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integrated database retrieval system
