Pyrus x bretschneideri (Chinese white pear): 103961040
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Entry
103961040 CDS
T03446
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03013
Nucleocytoplasmic transport
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103961040
09122 Translation
03013 Nucleocytoplasmic transport
103961040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103961040
03041 Spliceosome [BR:
pxb03041
]
103961040
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103961040
Spliceosome [BR:
pxb03041
]
Complex C
Other components
EJC/TREX
103961040
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103961040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
103961040
NCBI-ProteinID:
XP_009371827
LinkDB
All DBs
Position
Unknown
AA seq
1869 aa
AA seq
DB search
MSLPPVERAYVTDDCLRQWKNGNPSFKLPDPVPMLRFLYELCSTMVCGELPLHKCKAALD
SVEFSDEVSDQDLPSCFVDIITQLSQDIRMPGEDRARLVKLAKWLVESSLVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNSETS
SHNAAATIGIIKSLIGHFDLDPNHVFDIVLECFELQPDSDVFLELIPIFPKSHASQVLGF
KFQYYQRLEINSPVPFGLYKLTALLVKEDFIDLDSIYAHLLPKDNEAFEHYSAFSSKRLD
EANKIGKINLAATGKDLMDDEKQGDVTIDFFAALDMETGAVCERSAECENNQTLGLLTGF
LSVDDWYHAHLLFERLSPLHPVEHIQICDSLFRLIEKSISSAYDTVRRAHLPIFGASSGT
SIDVMNTENASIHGSFIELPKELFQMLACAGPYLYRNTLLLQKVCRVLRGYYSSALQLVN
SGEGVIDPNHVFGGNPRLHLKEARSRIEEALGTCLLPSLQLVPANPAVGQEIWEVMNLLP
YEVRYRLYGEWEKEDEQIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPM
TVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLEELIQQMANVHYTENLT
DDQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDESKLAIPLLILLAQHR
SVVIIEANAPYIKMVSEQFDRCHGTLLQFVEFLCSAVTPALAYAQLIPSLDDLVHKYHLD
PEVAFLIYRPVMRLFKCQGSSDVFWPLDNIDTQSIMSASSESEATEHSGNVVLDLGSPWK
PLTWSDLLSTAERMLPSKSWNSLSPDLYTTFWGLTLYDLYVPRNCYETEIAKQHAALKAL
EEISDNSSSAITKRKKEKERIQESLDRLTSELRKHEENVASVRKRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEVGRLGKFLCETLRIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITKLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKTGINLEKRVSKIKGDE
REDLKVLATGVCASLAAKKPSWVSDEEFGNGHLDLKNGQNGSKSSAGNSIAAQGEPMGGR
VGAVPSQHSDSTNSGKDQTLKRKLVDGRLERGESSPTAKSDQGHVKLKASSSVNGSDAKP
SITSATFQPATARSIENKKQVNEFSNKASDENMGKAAPKNSTESELRAQAKRSVPTGSLA
KLLKQDVAKDDSRSGKAIGRTSSMSDRDIPSHASAGTSNVSSSTAVNGNTDSASAKGSAS
FARTDIHGTESKVEVAAAKSSNTRISAPKEDGENSDAPRPHSSRLVHSPRHDNSAAASKS
SDKLQKRTSPEETDRQSKRRKGTTEVRDFEGEARVSDRERSVDARLLDPENSGTDHQSVH
KATDKPSDRSKDKGNERHEKDYRERLERPEKSRGDDLNERSRDRSMERHGRERSVEKLQE
RGMDRNLDRLPDKSKDDRGKVRYNDVSAEKSHVDDRYHGQSLPPPPPLPPHMLPHSVSSA
KRDEDEDRRFGTTRHTQRLSPRHDEKDRRRSEDNSLISQDDSKRRREDDFRERKREDREG
LSIKVEEREREREREREKATLLKEDTDATAASKRRKLKREHLPSGEAGEYSPVPPPPPLS
ISLSQSYDGRDRGDRKGPIVPRSGYLEEPSPRIHGKEVPSKMARRDTDPMYEWEDEKRQR
AEQKRRHRK
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccgcccgtagagcgtgcgtacgtcacagatgactgccttcgtcaatggaag
aatggaaaccctagtttcaagctcccggaccctgttccgatgcttcgatttctctacgag
ctctgttccaccatggtatgtggggaactgccgcttcacaagtgtaaagcggccttggat
tcggttgagttctccgacgaggtttcggaccaagacttgccttcctgttttgtggatatc
atcacccaattgtctcaagatattagaatgcctggagaggatcgtgctcgtctagtaaaa
ttggccaaatggttggtggaatcttctttagttccgttgagacttttccaggagcgctgt
gaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaggaattgaagagt
aaagaggtcagagtaaatacccgtcttctatatcagcaaacaaaatttaaccttctccga
gaagagagcgagggctatgccaagctggttactcttctttgccaaaactcagaaacttca
tcacacaatgcagcagcaacaataggaattataaagtcattaattgggcattttgatctg
gacccaaatcatgttttcgatattgttttggagtgctttgaacttcaaccagatagtgat
gtctttttggagctgataccaatttttccaaagtctcatgcttcacaagtccttggtttc
aaatttcaatactatcagcgtttggaaataaatagtccagtaccatttggactttataag
ttaacagctttgctggtgaaagaggactttattgatcttgatagcatatatgctcatcta
cttcccaaggacaatgaggcatttgagcattatagtgctttctcttccaagcgacttgat
gaggctaacaaaattggtaaaataaatcttgctgcaaccgggaaggatctgatggatgat
gagaaacaaggagatgtgacaatagatttttttgccgctttagacatggaaacaggtgca
gtttgtgagcggtctgcagagtgtgaaaataatcaaactttgggcttgcttactggtttt
ctttccgtagatgactggtaccatgcacatctactatttgagcggctctcacctctccat
cctgttgaacatattcaaatctgcgacagcttgtttaggctcattgaaaaatcaatctct
tctgcttatgacactgttcgtcgagcacatcttccaatatttggggcttcctcaggaact
agtattgatgtgatgaatacggaaaatgcatcaatccatggatcatttatagaacttcca
aaagaactttttcagatgcttgcttgtgctggaccatatctttatcgtaatactttgttg
ctgcagaaggtatgtagagtattgagaggttattactcgtctgcgcttcagcttgtaaac
agtggtgaaggagtcatagatcccaatcatgtttttggaggtaatcctcgtctgcatctt
aaggaagcaaggtcaaggatagaggaagctttgggaacatgtctacttccttctttacaa
ttggtacctgcaaatccagctgttggacaggagatctgggaagtgatgaatctacttccc
tatgaggtgcggtatcgtttatatggtgagtgggagaaagaagatgagcagattcctatg
gttttagctgcaagacaaacagccaagttggacacaagaagaattttgaaacggcttgca
aaagaaaatttgaagcagctgggtcggatggttgcaaaattagctcacgcaaatccaatg
actgtactaagaacaattgttcatcagattgaggcgtacagagatatgattgctcctgtt
gtagatgcatttaagtatttgactcagctggagtatgacgttttggaatatgttgtcatt
gagcgtctggctcaaggaggtcgtgacaagctaaaagatgatggacttaatttgtcagac
tggcttcaatctttggcttcattttggggtcacttgtgtaagaaatacccatctatggaa
ttgagggggcttttccagtatcttgtgaaccaactaaaaaagggccaaggaattgaactg
gttctcctcgaggagcttattcagcaaatggcaaatgtccattacactgagaatctgact
gatgatcaactggatgccatggcaggcagtgagacgctgcgttatcaggcaacttctttc
ggtgttactcgtaataacaaggcactaatcaagtccaccaacaggctaagagactcactg
ctaccaaaggatgaatccaagttggcaatcccccttctaatacttcttgctcagcatcgt
tctgtggtcataatagaggcaaatgcaccttacatcaagatggttagtgaacagtttgat
agatgtcatggaaccctccttcaatttgtggaatttctttgcagtgctgtgacacctgca
ttggcttatgctcagctaattccttcgcttgacgatcttgttcacaaataccatcttgat
ccagaggttgctttcttaatttatcgccctgtaatgaggctcttcaagtgccaagggagt
tctgatgtcttctggcctctagacaatattgacactcaaagtatcatgtctgcaagttca
gagtctgaagctacagagcattctggaaatgtggttctggatcttgggtctccatggaag
cctttaacgtggtcggatcttcttagtactgctgaaaggatgctgccttcaaaatcctgg
aatagtctgtcacctgatctctatactacattttgggggctcacgctctatgatctttat
gtccctagaaattgttatgagactgaaattgcaaagcagcatgctgctcttaaagctctg
gaagagatttctgataattcaagttcagcaataaccaaacggaagaaagaaaaagaaaga
attcaagaatccctagatcgcctgactagcgaactccgtaagcatgaagaaaacgtcgca
tccgttcgtaaacgcttatctcgggagaaggacaaatggttgagttcttgccctgatact
ttgaagatcaacatggagttccttcagcgttgtatatttccacgctgtactttcagtatg
ccagatgctgtgtattgtgccatgtttgtgcacactcttcattcccttgggacaccattt
tttaacacagtcaaccacattgatgttctcatctgtaaaaccttgcagcctatgatatgc
tgctgtactgaatatgaagtaggtagacttgggaagtttctctgtgagacgttgaggatt
gcttactattggaagagcgatgaatctatttatgaacgcgaatgtggaaacatgccaggc
tttgctgtatattatagatatccaaatagccagagagttacttatggccagttcatcaag
gttcactggaaatggagtcaaaggattacaaagttattaattcaatgtctggaatcaacg
gagtacatggaaattcgaaatgcactcataatgttgacaaaaatatctagtgtttttcca
gttactcgaaaaactgggattaatcttgaaaaacgggtttccaagataaagggtgacgag
agagaggacctcaaggtgctggcaacaggtgtctgtgcctctcttgctgctaaaaagcct
tcatgggtttcagatgaggaatttggtaacggacatcttgatttaaagaatggacaaaat
gggtcaaagtcttctgctggtaattcaatagctgcacagggtgaacctatgggaggaaga
gttggagctgtaccctcccaacactcggattcaacgaactcaggcaaagaccagactcta
aaaagaaaacttgtagatgggaggttggaaagaggtgaaagtagcccaactgcaaaatct
gatcaagggcatgtaaaacttaaagctagctcatcggtgaatgggtcagatgcgaagcca
tcaataacctcagctactttccaacctgcaacggcaagatctattgaaaataaaaaacaa
gtgaatgaattctcgaataaagcctcagatgaaaacatgggaaaagctgcaccaaagaac
tctacagaatctgagttgagagctcaagcaaaacggtcagttcctactggatcacttgct
aagctgctgaaacaagatgttgcaaaagatgatagtagatctggaaaagcaattggcaga
acttctagtatgagtgacagagatattccgtcccatgcatcagctgggacttcaaatgtt
tcctcttccaccgcagtaaatggtaacacagattcagcgtcagctaaaggttcagcttca
tttgcgaggactgacattcatggtactgaatcaaaggtggaggttgcagctgcaaaatct
tcgaatacaaggatttctgctccaaaggaagatggtgaaaattctgatgcaccaaggccc
cattcttctcgacttgttcactctcctaggcatgataattctgctgctgcttcaaaatct
agtgataagctgcaaaagagaaccagtcctgaagaaactgacagacagagcaaacggcgg
aaagggacaactgaagtgagagattttgagggcgaagctcgagtgtcagaccgagagagg
tctgttgatgctcgactgttggatcctgaaaattcaggtactgatcatcaaagtgttcac
aaggctactgataagccttctgaccggtccaaagataagggcaatgaaagacatgaaaag
gattatagggaacgattggagcgtcctgaaaagtcgcgtggagatgatttgaatgagaga
tccagggacaggtcaatggagagacatggaagggagcgttcagtagagaaacttcaggag
aggggtatggataggaatttggatagacttcctgacaaatctaaggatgacagaggtaaa
gtaaggtacaatgatgtatcagcggaaaaatctcatgttgatgatcgatatcatggacaa
agcttacctccaccaccacccttacctcctcacatgcttccacattctgttagttctgct
aaaagagatgaagatgaagatagaaggtttggaactacaaggcatactcagaggctttcc
ccgaggcatgatgagaaggaccgtagacgatctgaagataattccttaatttctcaagat
gattcaaaacgtagaagagaagatgattttcgagaaagaaagcgcgaagatcgtgagggg
ctgtcaataaaggtagaggagcgggaacgggagagggagagagagagggagaaagcaacc
ctcttgaaggaggatacagatgcaactgcagcttctaagaggcggaaacttaagagagag
catctgccttccggggaagcaggtgagtattcaccagttccccctccacctcctctttca
attagtttgtcccagtcatacgatggaagggataggggagaccgaaaaggacccattgtc
ccgcgatcaggttacttggaggaaccaagtccgaggattcatggtaaagaagtacccagc
aaaatggctcgtcgtgacactgacccgatgtatgaatgggaggatgagaaaaggcaaaga
gctgaacaaaagcgaaggcatcggaagtga
DBGET
integrated database retrieval system
