Pyrus x bretschneideri (Chinese white pear): 103961484
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Entry
103961484 CDS
T03446
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103961484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103961484
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103961484
Spliceosome [BR:
pxb03041
]
Complex C
Other components
Step II factors
103961484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
AAA_30
Flavi_DEAD
AAA_24
nSTAND3
T2SSE
ATPase
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103961484
NCBI-ProteinID:
XP_009372311
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MEKRGHTEPIDLDKTTATLEPEANSDGGLFVPGKDRVVFRPPERKSLLGLDVLAIAKREG
SKVNGGFKTPRERGANVVSSMEEDEKSESVISDEKGTDEPTAIRSHSRRRYREISGSETP
RTESTVTEEGKLDDMHENRHSREHRRGDDSSPSGSSHSVRSRTPKYDRDDRGNERRDYKS
RYDRDDRGSERREYQDGSRSERQRYSSNGNDYYRRREGSRYEQEYSGEYGRKRSRYEDSK
RTPGRSDWDDGRWEWEESPRRDNYSNTSGRHQPSPAPMLLGASPDARLVSPWLGGHTPGS
AASPWDHVSPSPAPIRASGYSVKSSSSKYGVRSHQLTFSSESSQSFKDGEEDNLAEEHTY
EITESMRQEMEYNSDRAWYDREEGNTMFDTTDDSSLFYANDASFQKKEAELAKRLVRKDG
TKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERRVILLVHDTKPPF
LDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSQNKSRQRFWELAGSKLG
DILGVEKTAEQIDADTAAVGEDGEIDFKEDAKFAQHMKSGEAVSDFALSKTLSQQRQYLP
IFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLYEDGYTVNGIVGCTQPRRVAAMSV
AKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLRDSDLDKYRVVVMDE
AHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNV
LFSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLISSSKK
AVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKM
KVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLNELLPSPVPEIQR
TNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVE
FPLDPPLAKMLLMGDQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFSVPESDH
LTLYNVYQQWKQHQYRGDWCGDHFLHVKGLRKAREVRSQLLEILKTLKIPLTSCWPDTDL
VRKAICSSYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGMGCTPDYVVYHELILTAKE
YMQCATAVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKTAMEEEMENLRKTQAEEEK
ESKRKEREKRSKQQQQVSMPGLHKGSSTYLRPKKLGL
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacgaggtcacactgaacctattgacctggacaagacaacggcgacgttggaa
cctgaggcgaatagcgatgggggattatttgtacctgggaaggatagagttgtttttaga
cctccagagaggaaatctctcctggggttagatgtcctagctattgccaaacgggaaggt
tctaaggtcaacggtggattcaagaccccaagagaaagaggtgctaatgttgtctcatca
atggaagaagacgaaaaatcagagtctgtaatttcggatgaaaaaggtaccgatgaaccc
actgctatacgaagtcactctaggaggcgatatcgggaaatatctgggagtgagacacca
cggacagaaagtactgtaacagaagaaggaaaacttgatgatatgcacgagaatcgccac
tctagggaacatcggcgtggagatgattcgtctcctagtggaagttcccacagcgtcagg
tctcggacccctaagtatgacagggatgatcgtggaaatgagagaagagattacaagagt
agatacgacagggatgaccgtggtagtgagagaagagagtatcaggatggtagtaggagt
gaaagacaaagatatagtagtaatggtaatgattattatcgtcgaagggaaggtagccga
tatgaacaagaatatagtggagaatatggaagaaagcgtagtagatatgaagattcaaag
aggacacctggcagatctgactgggatgatgggagatgggaatgggaggagtcaccacga
cgtgataactactctaataccagtgggcgacatcaaccatcaccggcacctatgctgctt
ggtgcctcacctgatgcacgactagtatccccatggttaggtggccatacacctggttct
gctgcttctccttgggatcatgtctctccctctccagctccaatacgtgcttctggatac
tcagtcaaatcttcaagttcgaaatatggtgtgaggtcccatcaacttactttttcttca
gaaagttcacaatcattcaaggatggggaagaagataatttggccgaagagcacacatac
gagattactgaaagcatgcgtcaagagatggaatacaattctgatcgtgcatggtatgat
agagaagaaggaaacacaatgtttgatacgactgatgactcgtccttgttttatgcaaac
gatgcttcatttcaaaagaaggaagcagagttggcaaaaaggctggtccgaaaagatgga
actaagatgtctcttgctcagagcaaaaagttgtctcaactcactgctgataatgctcag
tgggaggatcgtcaacttttaagatctggtgctgttagaggtaccgaggtgcagactgag
tttgatgatgaagaagaacggagagtcattcttcttgtccatgatacaaagcctcccttc
ctggacggcagggttgtttttaccaaacaagcagagcccataatgcctataaaggatccg
acatcggatatggccataatttcacgcaaaggatctactctggttagggaaattcatgag
aagcaaagtcagaacaaatcacgtcaacgtttctgggagcttgcaggttccaaactgggt
gatatccttggtgttgaaaaaacggcggagcagattgatgcagatactgctgcagtaggt
gaagatggtgaaattgatttcaaagaagatgcgaagttcgcacaacatatgaagagcggg
gaggctgtgagtgattttgcattgtcaaaaacactctcacagcaacgacaatatttgccc
atattttctgtgcgagatgagttattgcaggtaattcgagaaaatcaggttattgttgtt
gttggagaaactggttctggaaagacaactcaattgacacagtatctttatgaagatgga
tacacagtaaatggtatagtgggttgcacccaaccaaggcgtgtagcagccatgagtgtt
gcaaaaagagtaagtgaagagatggagactgagcttggtgataaagttggctatgctatt
cgttttgaggatgtgactgggccaaataccataataaagtacatgactgatggagtactt
ctgcgtgaaacgctcagagattctgatcttgacaaataccgtgtagttgtcatggacgaa
gcccatgaaaggtcactaaacacagatgtgctgtttggaattttgaaaaaagtggtggcc
caacgtcgtgattttaagctcattgtgacatctgcaactctaaatgctcagaaattttca
aatttctttgggagtgtaccgatttttcacattcctgggagaacgtttcctgtaaatgtc
ttgttcagcaaaaccccatgtgaagattatgttgaaggtgcagtgaagcaggccatgaca
attcacatcacgagccctccaggtgatatcctcatcttcatgacaggccaagatgagatt
gaggcagcttgttatgcgcttgccgagcggatggaacaacttatctcgtcctccaaaaaa
gcagttccaaaactcttgatactccctatatattcacagttgcctgctgatttgcaagcc
aagatattccaaaaagctgaggatggggcacgtaaatgcattgtagcaaccaacattgct
gagacttctttgactgtggatggaatatattacgtgatcgatacaggctatggtaagatg
aaggtatataatcctcgaatgggtatggatgctcttcaagtgtttcctgttagtcgtgca
gctgctgaccagcgtgctgggcgtgctggtagaactgggcctgggacatgttatcggctg
tacacggagaatgcatatctaaatgaattactgcctagtcctgtgccagagattcagagg
actaaccttggtaatgtggtgttgttgctcaagagtcttaaggtcgagaacttgttagac
tttgatttcatggacccacctccccaggacaatattctcaactctatgtaccaattgtgg
gtcttaggtgccctgaacaatgtcggaggcttaactgaactaggctggaaaatggtggag
ttcccattggaccccccgcttgctaagatgttattgatgggtgaccagcttggatgcttg
gatgaggttctgacaattgtgtctatgctttcggtgccatcagtgttttttaggcctaaa
gatagggcagaggagagcgatgctgcaagggagaagttctctgttccggaatctgaccac
ttgacgctgtataatgtctaccagcagtggaaacaacatcagtatcggggggactggtgt
ggagatcattttttgcatgttaaaggcttacgaaaggctagagaggtgaggtcccaactg
ctggagatcctgaagacgctaaaaattcctttaacatcctgttggcccgatactgatctt
gtgagaaaagccatatgctcctcgtacttccacaattctgcaagattgaagggagttggc
gagtatgtgaactgcaggaccgggatgccatgccatttacatccgagcagtgctctttac
ggtatggggtgcactccagattatgtggtttatcatgaactgattttgacggcaaaggag
tacatgcagtgtgccacggcggtggagccgcagtggttggccgagttggggcccatgttc
ttttctgtgaaggattcagatacatcgatgctggagcataagaagagacaaaaggaggag
aaaacagcgatggaggaggaaatggagaacctgaggaagactcaagcggaggaagagaaa
gaaagcaagcggaaggagagggaaaagagatcaaagcagcagcagcaagtctcgatgcca
ggtttgcacaagggatcttctacatatttgaggccaaagaaacttggcttgtaa
DBGET
integrated database retrieval system
