Pyrus x bretschneideri (Chinese white pear): 103961630
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Entry
103961630 CDS
T03446
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103961630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pxb04131
]
103961630
Membrane trafficking [BR:
pxb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103961630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Beta-prop_EML_2
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR11_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
103961630
NCBI-ProteinID:
XP_009372475
LinkDB
All DBs
Position
Unknown
AA seq
958 aa
AA seq
DB search
MAPIPPDNGVEGDDEREEEGEEEEEEEEEEEEEEEEEEPRLKYQRMGGSIPTLLATDVAS
CIAVAERMIALGTHGGTVQILDFLGNQVKEFPAHTAAVNDLSFDIEGEFIGSCSDDGSVV
INSLFTDEKMKFEYHRPMKAIALDPDYARKSSRRFVAGGLAGHLYFNTKRWLGFKDQVLH
SGEGPIHAVKWRTSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPELLLPHLFWQDDS
LLVIGWGTSIKITSIKTNQSRATNGTYKHVPMSGMNQVDIVASFQTSYFISGIAPFGDTL
VILAYIPGEEDGEKEFSSSVPSRQQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYKAKD
YSLAHAPFSGSSYAGGQWAEGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLQHGWHEKALA
AVEAGQGRSELLDEVGSRYLDHMIVERKYAEAASVCPKLLRGSASAWERWVFHFAHLRQL
PVLVPYIPTENPRLRDTAYEVALVALATNPSFHKELLSTVKSWPPVIYSSLPVISAIEPQ
LNTSSMTDALQEALAVLYEIDGQYEKAFAVYADLLKPDIFSFIEKHNLYDSIREKVVQLM
MLDCKLAVPLLIQNKDLITPSEVVKQLLNASDKCDSRYFLHAYLHPLFEADPHSGKEFHD
MQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICIGRDLLKEQVFILGRMGNAKQALAVII
NKLGDIEEAVEFVNMQHDDELWEELIQQCLDKPEMVGVLLEHTVGNLDPLYIVNMVPNGL
EIPRLRDRLVKIVTNYRTETSLRHGCNDILKADIVNLLVKYYKEATHGIYLGNEEDEARS
KRNDSRASQVIEKSAGVRSMEVKSKPRGGARCCMCFDPFSIQSVNVIVFFCCHAYHVTCL
MDSTYTSEMKGSVATPSERVDDYGYGDSDVDDNGGDDTQPGGSRMRCILCTTAASGVK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattccgcccgataacggcgtcgaaggagacgatgagagagaggaagagggc
gaggaggaagaagaagaggaagaggaagaagaggaggaggaggaagaggaggaaccgagg
ctcaagtaccagcgaatgggaggtagcattcccacgctgttggctaccgacgtggcatcc
tgcatcgccgtcgcggaacgaatgatcgcgctcgggactcacggcggcaccgttcagatt
ctagattttctcggaaatcaggttaaggaattccctgctcatactgctgcagtgaatgat
cttagcttcgacatagaaggtgaatttataggaagctgttcagacgatgggtctgttgta
ataaatagtcttttcactgatgagaaaatgaagtttgagtatcatcgcccaatgaaggct
attgcactagacccagattatgcaagaaaatcatctagaagatttgtagctggtggttta
gctggtcatttatattttaatacaaaaagatggctgggctttaaagatcaggttttgcac
tctggtgaaggtcctatacatgcggtgaagtggagaacaagtctcattgcttgggcaaat
gatgcaggtgttaaagtgtacgatactgcaaatgatcaacgtataacattcattgaaagg
ccacgaggaagcccacgtcctgagcttttgctccctcacttattttggcaggatgactca
ttgttggtcattggctggggaacatcaatcaaaatcacatcgataaaaacaaatcagtca
agagccaccaatggaacatataagcatgtcccaatgtctggtatgaaccaggtggatatt
gtggcatcctttcagaccagctatttcatttccgggattgccccttttggtgatactttg
gtcattctagcatatatccctggtgaagaagatggggaaaaggaatttagcagctctgtt
ccttcacgacagcagggaaatgcacagagaccagaagtacgtattgtaacatggaataat
gatgaactttcaacagatgccttacctgtacatggctttgagcattacaaggcaaaggac
tattcccttgctcacgctcctttctcaggtagcagctatgctggcggccagtgggctgaa
ggtgatgaaccactgtactatattgtttccccaaaggatgtagtcattgcaaaaccaaga
gatgctgaagatcatattgcttggcttcttcaacatggttggcatgaaaaagctttggct
gcagttgaagcaggccagggacggagtgaacttcttgatgaggttggttctagatacctt
gatcatatgattgtggaaagaaaatatgctgaagccgcatctgtatgtcctaaattgtta
cgaggatctgcttcggcatgggaaagatgggttttccactttgctcatttgcgtcagctt
cccgtgttagtcccatatattccaacagaaaacccaagacttcgtgatactgcttatgag
gttgctcttgtagctctcgctacaaatccatcttttcataaggagcttttgtcaactgtt
aaatcttggccacccgtgatctactcttcattgcctgttatctcagctatagaacctcag
cttaatacatcgtccatgacagatgcccttcaggaggcactagcagtgttgtatgagatt
gatgggcaatatgagaaagcattcgcagtatatgctgatcttttgaagccagacatattt
tccttcattgaaaagcacaatttgtatgattctattagggaaaaggttgtccagttaatg
atgctagattgcaagctggcagttcctttgttgatccaaaacaaggatttaataactcca
tctgaagttgttaaacaacttttgaatgcaagtgataagtgtgattccagatatttcttg
catgcatacttgcatccactatttgaagcagatcctcattctggaaaagaatttcatgat
atgcaggtagagctttatgcagaatatgatccaaagatgcttcttccttttcttcgtagt
agtcaacattataccctggagaaggcatatgaaatttgtattggaagagatcttttaaag
gagcaagtgttcattcttggaagaatgggaaatgctaaacaagcccttgctgtaatcata
aataaacttggggatattgaagaggctgtagaatttgtaaatatgcaacatgatgatgaa
ctctgggaggagttaatccagcagtgtcttgataaacctgaaatggtgggcgtgttattg
gagcacacagttggaaacctagatcctctctatattgtgaatatggttcccaacggattg
gagattcctagactcagggatcggctagtcaaaatcgtcaccaattacaggactgaaaca
tctttaaggcatgggtgcaatgatattctcaaggctgatattgtgaacctcttggtcaaa
tactacaaagaggcaacacatggaatttacttgggcaatgaagaagatgaggcacggtca
aagagaaatgatagtagggcttctcaggtgatcgaaaaatcggcaggtgtgagaagtatg
gaggttaagtcaaaacccaggggcggtgcaaggtgttgcatgtgtttcgatcctttttct
atacaaagtgttaatgtcattgttttcttttgctgtcatgcttatcacgtgacttgtctt
atggattccacctatacgagtgaaatgaaagggagtgtggccactcctagtgagagagta
gacgattatgggtatggcgacagtgatgtggatgacaatggtggtgatgatacccaaccc
ggtggttcccgtatgcgttgtatcttatgtactactgctgctagtggagtgaagtga
DBGET
integrated database retrieval system
