Pyrus x bretschneideri (Chinese white pear): 103961808
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Entry
103961808 CDS
T03446
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103961808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103961808
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103961808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_14
TPR_16
TPR_8
TPR_12
TPR_9
TPR_15
BTAD
TPR_7
Motif
Other DBs
NCBI-GeneID:
103961808
NCBI-ProteinID:
XP_018506530
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MTDAAATRALLRGSWLRVPHPESSQVFPKSCLSKAAEQFLVAAKLKPEIEKGGAFTYLGL
YYAGLGSESHTQRALKCFQKAVSLNPDDSLSGEALCELLDQQGKESLEVAVCREASQNSP
RAFWAFQRLGYLQLHQNKCSDAVHSLQHAIRGYPTSAHLWEALGLAYQRLGRFTAALKSY
GRAIELEGTRIFALLESGNTFLMLGSYKKGVETFQQALEISPKSVSAHYGLAAGMLGLAK
ECNNLGAYRWGATVLEEASKVAWMSTQLAGNLSSIWKLHGDIQLTYAKCYPWMEEGNGLE
FDMESFDNSILSWKRTCCLAAKTARCSYQRALHLAPWQANMYIDIAVTSDLIDSLDNSSG
HDLSAWHQSEKMALGALLLEGDNSEFWVALGCLSDHKALKQHALIRGLQLNVSLAVAWAY
LGKLYRNQGEKQFARQSFDCARSIDPSLALPWAGMSADFHAGESAVGEAYESCLRAAQIL
PLAEFQIGLAKLALASGNLSSSQVFEAIRQAMQRAPHYPECHNLNGLVSEAQCNYQSAAV
SYRLARRAITNLSGSDRKSHMTDISVNLARSLSKAGNALDALHECEDLKKEGLLDVEGLQ
IYAFSLWQLGETNLALSVVRSLAVSVSTMEQKSAAAPVVFICRLLYYISGLDSAINSILK
MPKQLFRSSKISFIISAIHALDQSNRLQSIVSSTRDYLKSHEEITGMHFLIALGKLVKHG
SECCLGYQSGVNHLRKALHMYPNSSLLRNFLGYLLLSTEEWNDTHIATRCCNVDTMNPIE
GGLKSAYEILAAGAVACYAVGTCNPKFSYPTCTYQCLNEPGTIQQLQKCLRREPWNQNIR
YLLVLNLLQKAREERFPSHLCIILERLITVALSDEFYHNDDSSYEYKKFQLLLCASEICL
QGGNLTGCINHAKNASSIMLPDGYLFFAHLLLLRAYASEGNMVNLQKEYIRCLQLKTDLH
IGWICLKLMESCYEVQTDLDMLELSFRECPTESMNSRNMWGAIFSLVKGLICIWNQDIVS
AEEFLAQACSLAGAECSLLLCHGATCMELSRRGCASQFLSLAIRSLVKAQEASLIPLPIV
SALLAQAVASLGSKEKWEKNLRLEWPTWPPEMRPAELFFQMHLLAKQSKASPQSSSVEFC
QSPQRWVLRAIHTNPSCMRYWTVLQKFVE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgcagctgctaccagggctttattacgcgggtcttggctccgagtcccacac
ccagagagctctcaagtgtttccaaaaagctgtctctctaaagcggcagagcagttccta
gtcgccgcgaaattgaagcctgagattgaaaagggaggggcattcacatatctagggctt
tattacgcgggtcttggctccgagtcccacacccagagagctctcaagtgtttccaaaaa
gctgtctctctcaatcctgatgactccctttctggggaagccttgtgtgagttgttggac
caacaaggaaaggagagcttggaggtggccgtgtgccgggaggcttcccaaaattcaccc
cgggccttttgggcttttcagagactgggttacttgcagctccatcaaaacaaatgctct
gatgctgtccacagtcttcaacatgccattcgaggctatcctacctccgcacatctctgg
gaggctcttggccttgcgtaccagcgactaggcaggttcactgctgctttaaagtcctat
ggaagagccatcgaattggagggtacaagaatatttgcgttgcttgaaagcggaaacacc
tttttgatgcttggttcctataaaaagggagttgagacatttcagcaagctttagagatc
tcccccaaaagtgtctctgcacactatgggcttgctgctgggatgcttggtttggccaag
gaatgcaataatttgggagcatatagatggggagctacagtgctagaggaggcatctaaa
gttgcctggatgagcactcaattagctggaaatttgtcatctatttggaaactgcatggt
gacatacagcttacttacgcaaagtgttatccatggatggaggagggaaatggtttagaa
tttgatatggaatcttttgataattccatcctttcatggaaacgtacctgctgtttggct
gcgaaaactgccaggtgctcttatcaacgagctttacacttggccccatggcaagctaat
atgtatattgacattgcagtaacttcagatctcatagactctttagacaacagttctgga
catgacttaagtgcttggcatcaatcagagaagatggctttgggagccttgttacttgag
ggtgacaattctgagttttgggtagccttgggatgtttgtctgatcataaagcattgaaa
caacatgctctaatcaggggattgcaattgaatgtatctctagctgttgcttgggcatac
ctagggaagctttatagaaaccaaggtgagaaacaatttgctagacaatcatttgattgt
gccagaagtatagatccttcacttgctttaccatgggcaggcatgtcagctgattttcat
gctggagagtctgcagtcggagaagcttatgagagctgcttacgagctgcgcagatattg
cctcttgctgaattccaaattggtcttgcaaagcttgctcttgcttcagggaatctttca
tcttcacaggtctttgaagccatcaggcaggccatgcagcgtgcacctcactatcctgaa
tgccataatttgaatgggctagtttctgaggcacaatgcaattatcagtctgctgccgtt
tcttatagactagcacgccgtgcaatcaccaatttgtcaggcagtgacagaaagtcgcat
atgacggatatatctgtcaatttggcccgatcccttagtaaggcagggaatgctctagat
gctttgcacgaatgtgaagatttgaagaaagaagggttgctcgacgtggaaggtttgcaa
atatatgctttctccttgtggcaacttggtgagactaacctggctctttctgtggtaaga
agtctggctgtgagcgtttctacaatggagcaaaaatctgcagctgcccctgttgttttt
atctgtagactcctttattatatttctggactggattcagccatcaatagcattctgaag
atgccaaagcaactatttcggagttcgaagatcagtttcataatatctgctattcatgct
ctagatcaaagtaatcgtcttcagtctattgtgtcaagcacccgtgactatcttaagtct
catgaagagataactggaatgcactttttgatagcacttggtaaactagtaaaacatgga
tcagaatgctgtcttggatatcaaagcggagttaatcaccttaggaaagctcttcatatg
tatcctaacagtagcttattaaggaattttcttggttatcttttgttgtccactgaagaa
tggaatgatacccacattgcaactaggtgttgcaacgttgatactatgaatccaattgaa
ggtggtttaaaatcagcatatgaaattcttgctgcaggagcagttgcttgctatgctgtt
ggcacttgcaatcccaagttctcttacccaacatgcacataccagtgcctgaatgaacct
ggaaccatccagcaactacagaaatgtttacgcagagaaccatggaaccagaacataagg
tatttgcttgttctcaatttactgcagaaggcacgtgaagagagatttcctagtcatctt
tgtattatacttgagcggctaataactgtagctctttccgatgaattttatcataatgat
gactcatcttatgaatataagaaattccagcttctactttgtgcttctgagatctgtttg
caaggtggtaatttgactggctgtatcaaccatgccaaaaatgcttcatcgattatgctc
cctgatggctatcttttctttgcacacttgctactactccgtgcctatgcctcagaaggt
aatatggtaaaccttcaaaaagagtatataagatgcttgcagctcaagacagatcttcat
attggttggatatgtctaaaactcatggagtcttgttatgaagtgcaaactgacttggat
atgttagaactgagcttcagagaatgcccaacagagtcaatgaattcacggaatatgtgg
ggggctatattcagtctggtgaaaggcttgatttgtatatggaaccaggacattgtttct
gcagaagagtttcttgcacaagcttgttcattggcgggtgctgagtgcagcctcctgctt
tgtcatggtgccacctgtatggagctttcccgccgggggtgtgcttcacagttcttatca
cttgccataaggagtcttgttaaagctcaagaagcttctctcattcccttaccaattgtc
tcagcattactagcgcaagcagtagcaagtcttggctcaaaagagaagtgggagaagaac
ctccgtcttgaatggcccacttggccgccagaaatgaggcctgctgagctgttcttccag
atgcatttgcttgcaaaacagtcaaaagctagtccacaatcttccagtgtggagttttgt
cagagtccgcaaagatgggttcttcgagcaattcatacaaacccttcttgtatgagatat
tggactgttttgcagaagtttgtggaatga
DBGET
integrated database retrieval system
