Pyrus x bretschneideri (Chinese white pear): 103962558
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Entry
103962558 CDS
T03446
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03440
Homologous recombination
pxb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103962558
03450 Non-homologous end-joining
103962558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxb03032
]
103962558
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103962558
DNA replication proteins [BR:
pxb03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
103962558
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
103962558
BRCA1-C complex
103962558
NHEJ (non-homologous end-joining)
MRX complex
103962558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
Rad50_zn_hook
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
103962558
NCBI-ProteinID:
XP_009373549
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCSGELPPNAR
SGHSFVHDPKVAGETETKAQIKLRFRTAAGKDVVCIRSFQLTQKASKMEFKAIDSVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLQLENLQTKKDIAYKLREQISQAQEKANFLKS
EMQGLEGMIQDVNTKIQYTDTKLKDLKKLEDQISQKTAVRSTLVNEREEKHKALEEENED
TDEELKEWKTKFEEKIALLETKIRKLEREENDAESKITFLEKTLKESIREISKLENEAEV
HLCSKNERDSIIQKLFSRHNLGALPNPPFSNEVALNLTNRIKSRLLDLEKDLQNKKMSNE
KELETTWDCYNDVKDRWKSIEAQQEAKEEIKNGLLKRIEEKKNERDSLELEVSNVDLSHI
DEKEKNMHIELERKTNQYAKREFESTIRQKYNEMFSIEQMITVAKKEKVAMAVDTEDRTK
LSMKKNDLENRKRQHGKIINENRERVRGVLKGRFPPEKDLRGEISKVLSAVTMEFDDLST
KSREAENEVNMLQTRIQEINNNIYKHRKDMDSKRRYIESKLQALDQQSFTVDYYPTVLDS
AKEKRDVEKRKYNFADGMRQMFDPFERVARANHICPCCERPFSLQEEDEFVKKQRMNAAS
SAEKLKVLAAESSTADSFFQQLDRLRMVYEEYVNIGKERIPNAERELHDLTQEMEQKSHA
LDDVLAVSAQVKAEKDSIQALMEPIENADRLFQDIQREQKLVDELAHKLEQGHGARSMQD
IETELDNLLETKDNLHREVMQLRTEQTELQDDLSAVRNRWHNIREEKVKAANLLSDVKRA
EEELERLTEEKNRVDLDEKLLAESLRPLSKEKDKLLGYHNDLKVKLNREYDEQAERKREY
EQEVEALNMINLKIKEYNDSKKGEKLQEIQEKQHLLESQLQSCKTRKKEILAELNKSKDL
RGKQDQVRRNIEDNLSYRKTKAEVEELTHELESLEDKMLKIGRKPKVQAELEKLSHEREE
FLKRLNQNEGIISAHQSEISKHKIDLKNPDYKDIDKRYFDQLIQLKTTEMANKDLDRYYN
ALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYICIHSDSDGAGTRSYSYKVLMQTG
DTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNADSLAAALHR
IMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtggacaagatgctaataaagggaatccggagcttcgacccggagaacaag
cacgtcatcaccttcttcaagcccttaaccctaatcgtcggccccaacggcgccggcaaa
accaccattatcgagtgcttgaagctctcctgctccggcgagttgcctcccaacgctcgc
tccggccacagcttcgtccatgaccctaaggtcgccggcgaaaccgagaccaaagcccag
attaagctccgcttcaggaccgctgccggcaaagatgtggtatgcattaggtcgtttcag
ctcacgcagaaggcctcgaaaatggagttcaaggccattgacagcgtccttcagaccatt
aatccccacactggagagaaagtttgccttagttatcgatgtgccgatatggatagggaa
atccctgctttaatgggtgtgtcaaaggctatcttagaaaatgttatatttgtgcaccaa
gatgaagccaattggcctttgcaggatccttcaacattgaagaagaagtttgatgatatc
ttctctgctacccgatatactaaggcattggaggtaattaaaaaacttcacaaggatcaa
gctcaagagataaagacctacaagctacagttggagaatcttcaaaccaaaaaagatatt
gcatataagcttcgcgagcaaatttctcaagctcaagaaaaagcaaattttttgaaaagt
gagatgcaggggttggagggaatgatccaagatgtgaatactaaaattcagtatactgac
acaaaactaaaggatttgaagaagctggaggaccagatatcacagaaaactgccgtgaga
agcaccctggttaacgagcgggaggagaagcacaaggctcttgaagaggagaatgaagac
actgatgaagaattgaaggaatggaaaaccaagtttgaagaaaagattgcgcttttggaa
actaaaatcaggaagttggaaagggaagagaatgacgcagagagcaaaattactttcctt
gaaaaaacgcttaaggaatctataagggagattagcaagctcgaaaacgaagctgaagtt
catttgtgctcaaagaatgagagagattctatcattcaaaagctcttttcaaggcacaat
ttgggtgctcttcctaatcctcccttcagcaatgaagttgctctgaacctcaccaatcga
ataaaatcaaggttgttggatctagaaaaggatttgcaaaataagaagatgtcaaatgaa
aaagaacttgagacaacatgggactgctacaatgatgtaaaagaccgttggaagtctatt
gaggctcagcaagaagccaaagaagaaataaagaatggccttctgaagcgcatagaggaa
aaaaagaatgagcgtgattctttagaacttgaagtttcaaatgttgatctttctcacatt
gatgaaaaagaaaaaaatatgcatattgagcttgagagaaagacaaaccagtatgctaaa
agggaatttgaatcaacaatacgccaaaagtataatgagatgtttagcatcgagcaaatg
attacagttgctaagaaagagaaagttgccatggctgttgatacagaggacagaacaaaa
ctgtctatgaagaagaatgatttggagaaccgcaaaaggcaacatggaaagattattaat
gaaaacagggagagagttagaggagtgctaaaagggaggtttcctccagagaaggatttg
agaggcgaaatcagtaaagtattgagtgctgttaccatggagtttgatgacttgagcacc
aaatctcgtgaagcggagaatgaggtgaatatgttgcagacaagaatacaagaaattaac
aataacatctacaagcatcggaaagatatggactcaaagaggagatatattgagtctaaa
cttcaggccttagatcagcaatcttttactgttgattactatcctacagtcttggattca
gccaaggagaaaagagatgtcgagaaaaggaaatacaattttgcggatggtatgcgacaa
atgtttgatccatttgaaagagttgcccgtgccaatcatatttgcccttgctgtgaacga
cctttttctctacaagaggaagacgaatttgttaaaaagcaaagaatgaatgctgcaagt
tctgctgagaaattaaaagtgctggctgcagagtcctcgactgctgactctttttttcag
caattggacaggcttcgcatggtttatgaagaatatgttaacattgggaaggaaagaatc
cccaatgcagagagagaactgcatgaccttactcaagagatggaacaaaagtctcatgcc
cttgatgatgtgttagcagtttcggctcaagtaaaggctgaaaaggactcgattcaggcc
ctgatggaacccattgaaaatgctgacagactatttcaagatatacaaagagaacagaag
ctagttgatgagctggcacataaacttgaacaaggccatggtgcgagatctatgcaagat
attgagacagagctggataatctgctagagacaaaggataatttgcatagagaagtaatg
cagttgagaaccgaacaaacggaattacaagatgatttgagcgcggtccgaaatcggtgg
cacaacataagggaagagaaagtcaaagcagctaatttattgtccgatgtcaaaagggca
gaagaagagttggagcgtttgacggaagaaaagaatcgagtcgatcttgatgaaaagctt
ttggcagagtctcttcgccctttatcgaaggagaaagataaattacttggctaccataat
gacttaaaagttaaacttaatcgcgaatatgatgagcaagctgaacgaaaaagagaatac
gagcaggaagttgaggcattaaatatgattaatttgaaaattaaagagtataatgattca
aagaaaggtgagaagttgcaggaaatccaagaaaagcaacatctgcttgaatctcaactt
caaagttgtaaaactagaaagaaggaaatcttagctgagttgaacaaaagcaaagattta
agagggaaacaagatcaggtaagacgaaatattgaggataatttgagttacaggaaaacg
aaagctgaagtagaggaacttacccatgagcttgagtcactggaagacaaaatgctgaag
attggtcggaagcccaaagttcaagctgaacttgaaaagctctctcatgagagggaggag
tttctgaaaaggttaaaccagaatgaggggatcatttctgctcaccagagcgaaatttca
aagcataaaattgatctcaaaaacccagattacaaggacattgacaagcggtactttgat
cagctaatccaactaaagacaactgagatggcaaacaaggacctcgacagatactacaat
gcgcttgataaagcattaatgcgcttccacagcatgaagatggaggaaataaataaaatt
ataagagagttgtggcagcaaacataccgaggacaagatatagactacatctgtatacac
tcagattctgatggtgctgggactcgttcttacagttacaaggttctcatgcagactggt
gatacagagcttgaaatgagaggaaggtgtagtgctggtcagaaggtccttgcctccctc
atcataagattggctttggctgaaactttctgcctcaactgcggaatactagcactagat
gaaccaactacaaacctggatggcccgaatgctgatagtctggccgctgctctccacaga
attatggaggaccggaagggccaggagaacttccagctgatagtaattactcacgatgag
cgtttcgctcaactaattggccagcgccagcatgcagaaaaatattatcgggtggcaaag
gatgatcaccagcatagcataatcgaagcccaggagatctttgattga
DBGET
integrated database retrieval system
