Pyrus x bretschneideri (Chinese white pear): 103963235
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Entry
103963235 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103963235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103963235
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103963235
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103963235
mRNA degradation factors
3'-5' decay
Ski complex
103963235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
103963235
NCBI-ProteinID:
XP_009374297
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MDPVEAVNGLSFRVGFSGHSGHLRLEPLSTVESSDPVKSLPDFILPPAFPRETPESIKEY
IEEKYLSPRLDDEVFAPEKVGRQWDFDWFDKANVPLEPSLPRCVVVPTWELPFRRQKSGS
AEYQWEPKSVEVDVSELIVGAQESGSLPRLAGPAKDFVRGSINNRPFRPGGLDDSQSLER
VLPDGASNGEWVRELLVGGSPQAVPPSFKQGMDLGDLKAYPCSWNVYKDQSSLESASDEK
PSLQSGLSVQFDDLFKKAWEEDVVEFEGDGQLSGSESVKSEDEAKEVDVAIDTSEPELSL
LDEILSVAAGESKSRSNGLGEDDEQNPKKAWAISGGTEYIAENFGDLVPDKALDFPFELD
KFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRD
LCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVER
GVVWEEVIIMLPRHINIVLLSATVPNKVEFADWIGRTKQKQIRVTGTTKRPVPLEHCLFY
SGELYKICESEIFIPQGFKAAKDAFKKKNMSATTGGSGSQAPASASHDGTRSQKQSSNWG
GKQKKQSGSQNSGNFSRTGGANQNNGNGMNSWGLRRSDASLWLSLINKLSKMSLLPVVVF
CFSKNRCDKSADSMYGTDLTSSSEKSEIRVFCDKAFSRLKGSDRTLPQVIKVQSLLHRGI
GVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQL
LPGEYTQMAGRAGRRGLDKIGTVIVMCRDEILEESDLKHVIVGSATRLESQFRLTYIMIL
HLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKTIECIKCESAIEEYYDM
YSEAAKYSKEISEAVMQSSIAKQFLTTGRVVVMGSHSAQDHLLGVVVKAPSANNKQYIVL
VLKPELLPQTPLGSGNLQDSKNTNFPQGYFVVPKSKRALDEEYRSGVTPRKASGVIKIKL
PHQGSAAGVSFEVKEVDSKDFLCICNCKIKIDQVGLLEDNSNAAYSKTVQQLLDTKSDGK
TYPPALDPYKDLNLRDVNLVGTYHKWINLLQKMAMNKCHGCIKLDEHIKLAREIKRHSEE
VDALKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELISTECL
FENQLDDLEPEEAVALMSAFVFQQRNTSEPSLTPKLSQAKQRLYDTAIRLGQLQAHFNVQ
INPEEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAA
SIMGNSALYKKMETASNAIKRDIVFAASLYVTGV
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgtagaagccgtgaacgggctctcgttccgggtcgggttctccggccacagt
ggccacctccggctcgagcccctctccaccgtcgagagctccgaccccgtcaagtctctc
cctgatttcattctgccgcctgcatttcctagggagacgcccgaatcaataaaagagtat
atagaggagaagtatctatcgccaagattggacgacgaagtatttgcacctgaaaaagtt
gggaggcagtgggatttcgactggtttgataaggcaaatgtacccttggagccatcactg
ccgcgctgcgttgtggttcccacgtgggaattgccgtttcggcgccagaagagtgggtcg
gccgaatatcaatgggaacctaaatctgtggaggtggatgtctcagaacttatagtagga
gctcaagagtctggttcattgccacgtttggctggaccagctaaggattttgtacgggga
agcatcaacaaccgcccttttcgtccgggaggcttggatgattcccaatctctagaaaga
gttcttcctgatggtgcttctaatggcgaatgggtacgcgaacttcttgttggtggctct
cctcaggctgtacctccaagctttaagcaaggaatggaccttggtgatctgaaggcctat
ccatgctcgtggaatgtatataaggatcaaagttccctggagagcgcgtcagatgaaaaa
ccgtctttgcagagtgggttgtctgtacagtttgatgacctgttcaagaaggcttgggaa
gaggatgttgttgaatttgaaggagatggtcaattatcaggatcagaatctgttaagtca
gaggatgaagcaaaggaggttgatgttgccatcgatacttctgagcctgaattgtctttg
ttggatgagattttgtcggttgcggcaggagaatcaaagtcaagatctaatggacttggt
gaagatgatgaacaaaatccgaagaaggcttgggctattagtggaggtactgaatatatt
gcagagaactttggtgatcttgttcccgacaaagcacttgattttccttttgaattggac
aaattccagaaggaggctatttattatcttgaaaagggggactcagtatttgtggctgct
cacacatcagctggaaagacagttgttgcagaatatgcatttgctttagcatcaaaacat
tgcaccagagctgtgtatactgctcccatcaaaaccattagcaatcaaaaatatagagat
ttgtgtggaaaatttgatgttggacttctcactggtgatgttagcttgaggccagaggct
tcttgtcttattatgaccaccgaaatattaaggtcaatgctttatcgtggtgctgacata
atacgtgatattgaatgggttatctttgatgaagtgcactatgtcaatgatgttgaaaga
ggtgttgtttgggaagaagttattataatgcttccaagacacatcaatattgttctcctt
tcagctacggtaccaaacaaagttgagtttgctgactggatcggacggacaaagcaaaag
caaatccgtgttactgggactacaaaaagaccagtcccattggagcactgtctattttac
tccggagaactttacaaaatatgtgaaagcgaaatcttcattccccaggggttcaaagct
gcaaaagatgcatttaagaaaaagaatatgagtgccactactggtggtagtggatcacag
gcaccagcttccgcttctcacgatgggactcgatctcaaaaacaaagttcaaactggggc
ggaaaacagaagaagcaatctggttcccaaaattcagggaatttctcccgaactggagga
gcaaatcaaaacaatggaaatggcatgaacagttggggtttaagaagatcagatgcttct
ttgtggttgtcacttattaacaagctctcaaagatgtcgctgttacctgtggttgtattt
tgtttctcaaagaatcgctgtgataagtcagctgatagtatgtatgggactgaccttaca
agtagttctgagaaaagtgagattcgtgttttctgtgacaaagcattttcgcgcctaaag
ggatctgacaggactttaccacaggttatcaaagttcaaagccttctccatagaggaatt
ggcgtccatcatgctggactacttccaattgttaaggaagtggtggaaatgcttttttgt
cgtggagtgatcaaggttttgttctcaacagagacatttgcaatgggggttaatgcacca
gctagaacggttgtttttgatacgttaaggaaatttgatggcaaggaatttagacaatta
cttccaggagaatacactcaaatggcaggccgtgcgggcagaagaggacttgataaaatt
ggtacagttattgtaatgtgccgtgatgaaatcctagaagagagtgatttgaagcatgtc
atagttggaagtgcaaccaggcttgaatctcagtttcggcttacctatatcatgatcctg
catctccttcgtgttgaggaactgaaggtggaggacatgctgaaaagaagttttgctgag
ttccatgctcagaagaaactaccagaacagcagcaacttctgatgcgaaagcttgctcag
cctacaaaaactattgaatgtataaaatgtgaatcagctattgaggagtattatgacatg
tactcagaagctgcgaagtatagcaaggaaatatcggaggccgttatgcagtcttctatt
gccaaacaatttcttacaactgggagagtggtagtcatgggatcacactcagcacaggac
cacttgcttggagtcgtcgtgaaagcacctagtgctaataataaacagtacatcgttttg
gtgctgaaacctgaattattgccccagactccactgggtagtggtaacttgcaagacagt
aaaaacacaaattttccacaaggttatttcgtggtaccaaaatctaaacgtgctcttgat
gaagagtatcgttctggtgtcacacctcggaaagcatcgggtgtcatcaagataaaatta
ccacaccagggttctgctgctggggtgagctttgaggttaaagaagttgacagcaaagat
tttctatgcatatgcaattgcaagataaaaattgaccaagttgggcttcttgaagacaat
agcaatgctgcttactccaagacagttcaacagctgttggacacaaaatccgatggaaag
acgtaccctccagccttggatccatataaagatctgaatttgagagatgtaaatcttgtc
ggaacataccataagtggattaacttattgcaaaagatggcaatgaacaagtgccatggg
tgtataaagttggacgagcacattaagttggcaagagagataaagagacacagtgaggaa
gtcgatgctcttaagtttcaaatgtcagatgaagcacttcaacaaatgccagactttcaa
ggccggatagatgttctgaaggaaattggatgtatagatgctgatcttgtggttcaaata
aaaggccgtgtagcatgcgaaatgaattctggggaggagttgatatccacagagtgtttg
tttgaaaaccaactggatgacctggaaccagaagaagcggtggcgttgatgtctgccttt
gtgtttcagcagaggaatacttcagaaccttctcttactccaaaactgtctcaggccaaa
cagaggttgtacgatacagcaataagacttggccagcttcaagcccacttcaatgttcaa
ataaatccagaggagtatgctcgagagaatctcaagtttggtcttgttgaagtcgtttat
gagtgggcaaagggcactccgtttgcagacatttgcgaacttacagatgttcccgaaggc
atgatagttcgaaccattgtcagacttgatgagacgtgccgtgagttcaaaaatgctgca
tctattatgggcaattctgctctgtacaagaaaatggaaacagcatcaaatgcgataaag
cgtgacattgtatttgccgctagcttatatgtcaccggagtctaa
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