Pyrus x bretschneideri (Chinese white pear): 103965461
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Entry
103965461 CDS
T03446
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103965461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103965461
03041 Spliceosome [BR:
pxb03041
]
103965461
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103965461
Spliceosome [BR:
pxb03041
]
Complex B
Other components
Prp19-related factors
103965461
Complex C
103965461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
HAT
Motif
Other DBs
NCBI-GeneID:
103965461
NCBI-ProteinID:
XP_009376832
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLVNTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLAAVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDDEEDKENGVAEDGNEEEEDLRLDINLSVVELEKKMLDGFWLHYDKDIDL
RLARLDHLMDRRPVLANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENYNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEVHKYFEDAFKVYQKGTKIFKYPHVKDIWVTYLSRFVK
RYGKKELERARELFEEAVQAAPADAKKPLYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTRDIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
GVYTFASQFSDPRSDVDFWSKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQRLNMDEAKDKLKQAGVPEDEMAALERQLAPVANDTTTKDSRIGFVSAGAIQQTDG
GIKVTSNPEDIELPEENDSEDDERVEIQIAQKEVPDAVFGELANKRKEAERDEGGDADTK
DDGSRLGALERIKRLKRGA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaggagctatacccatcgcaagacgacctgctctacgaagaggagctt
ctccgcaacccattcagcctcaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaagaagcgcttcataatctacgagcgagccctcaaggctctgcccggaagctac
aagctctggtacgcttacctccgcgaaagactcgagcttgtaaggaacttgcccatcact
cactcgcagtatgaaacactagtcaacacgtttgaacgagccctagtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactttgacggagcagaaattggtcaccaag
actcgccggacctttgacagagcgctgtgtgctcttcccgtgacgcagcacgatcgcatt
tgggagccctacctcgtgttcgtgagccaaaagggcatcccaatcgagacctcgcttcgg
gtttatcgtaggtatttgaaatatgaccctacacatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggctggctgctgtgttgaatgatgat
aagttttactcaataaaggggaagacgaaacataggctgtggctagaattgtgtgatttg
cttactaagcatgccaccgaggtttcgggcctcaatgtggatgctataattagaggtggg
attaggaagtttacagatgaggtggggcggttgtggacctctcttgcggactattacatt
agaaggaatttgcatgagaaggcgagggatatatttgaggagggtatgacaactgtggta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtgctt
gcccataagatggaaactgctgatttgagtgatgatgaggaggacaaagagaatggggtt
gcggaggatggaaatgaggaggaagaagatcttcgattggatattaacttgtctgtggtt
gagcttgagaagaaaatgcttgatgggttttggttacattatgataaggatatagatttg
agattagctcgattggaccatctcatggatagaagacctgtactagcaaatagtgttctt
ttacgacaaaatcctcataatgtagagcagtggcaccgaagagtgaagctctatgagggc
aatcccaccaagcagatacttacttacactgaggcagtgaggacaattgatccaatgaaa
gcggttgggaagcctcacactttgtgggttgcttttgctaagttgtacgagaactacaat
gatattgtcaatgccagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctgtggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcaccggttcagatgaagctgcataaatgcttgaggatt
tgggctttttatgtggacttggaggagagcctgggtaaattagagtccactcgagctgtt
tacgagagaatattggatttgaaaatagccacaccgcagatcataatcaattatgcatcg
cttcttgaggtgcataaatactttgaagatgcgttcaaggtgtatcaaaaaggtactaaa
atattcaagtatccacatgtcaaagacatatgggttacatatctctctaggtttgtaaag
agatatgggaagaaagaacttgagcgcgcaagagagctatttgaggaggctgttcaagcg
gcccctgctgatgcgaagaaacctttgtatcttcaatatgcaaagctggaggaggattat
ggcctatcaaagcgagcgatgaaagtctatgatgaagcaactaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctatattgcccgtgccacagagatatttggcgtccca
aaaacaagggatatataccagcaggccatagattctggtcttccggacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtgtatacatttgcgtcacagttttcagatccacgatctgatgtggatttctggagc
aaatggcatgagtttgaagtgcaacacggaaatgaagataccttccgggagatgcttcga
attaaacgaagtgtttctgcaagctatagccagacgcactttattctacctgagtacatg
atgcaaaaggatcagaggctgaacatggacgaggcaaaagacaagttgaaacaggcagga
gtccccgaagatgaaatggctgctctagagaggcagttggcacctgtggccaacgataca
accactaaagatagtagaataggctttgtgagtgctggagcaattcaacagactgacgga
gggatcaaagttacctcaaatcctgaagacattgagctaccagaagaaaatgattcagaa
gacgacgaaagggttgaaattcaaattgcacagaaggaggtcccggatgctgtttttgga
gagttggctaacaagagaaaggaggccgaaagagatgagggcggagatgctgatactaag
gacgatggcagccgccttggtgcccttgagagaataaaaaggctaaaacgaggcgcctga
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integrated database retrieval system
