Pseudoalteromonas xiamenensis: J5O05_01695
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Entry
J5O05_01695 CDS
T07215
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxi
Pseudoalteromonas xiamenensis
Pathway
pxi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5O05_01695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxi03400
]
J5O05_01695 (mfd)
Enzymes [BR:
pxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5O05_01695 (mfd)
DNA repair and recombination proteins [BR:
pxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5O05_01695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QTH71702
UniProt:
A0A975DH97
LinkDB
All DBs
Position
324484..327954
Genome browser
AA seq
1156 aa
AA seq
DB search
MSKAQWQALPWVKSKQDKIHWGQLIGSGLSLSLANAIEKRDELVVIVTQDTPSALKLETE
LNYLLSIPVRVFPDWETLPYDHFSPHQDIISQRLATLNALKSTKHSVLIVPAATLMLRTA
PKSFIHGTALQFKAGQSVDIEQLRQALTESGYRHVQQVMEHGEYAVRGSIIDLYPMGSET
PFRLDFFDDELDSIRVFDPETQRSLDKIDFIDLLPAHEFPTAQSDIERFRIQYRAKFGAS
SESDSIYMQVSKGSLPAGIEYYFPLFFESTATIFDYLPDDATFMHLGDVEHAANSFWVDV
NKRYENRRVDPLRPLLAPNELYLPVDSLFEQFGHYPRIRLSLAPLGTRAGHTNLDCALIP
ELKIDHKLTDPYKALLNFIALQKKQGGRVLFSVESDGRRESLLTLLKPTGLKLKSFTHLQ
KFVSAKDDVGIIVSPLEQSVLLFGELPLTVITEQELLGVKISQRRRRKHKFDQGQDALIR
NLAELKEGQPIVHLDHGVGRYIGLQTIEANGIATEFVTITYANEAKLYVPVGSLHLLSRY
SGGEEAHAPLHKLGSDVWERAKRKAAEKVRDVAAELLDIYAKRQSKPGYAFKLEQSAYRD
FGDSFPFEETDDQRNAIEAVLMDMQSPQAMDRLVCGDVGFGKTEVAMRAAFVSVNDGKQV
AVLVPTTLLAQQHYENFKDRFADLPVEVGVLSRFNSTKEQKETLTKLEEGKLDIVIGTHK
LLQEDIKFSDLGLLIVDEEHRFGVRQKEKIKQLRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREREDELIREAVLREIKRGGQVYFLHNNVETIEKVAEDITQL
VPEATVAIAHGQMREKELESLMGDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKLG
LAQMHQLRGRVGRSHHQAYAYLLTKPANALTPDAVKRLQAIESLEDLGAGFALATHDLEI
RGAGELLGDDQSGQIQTIGFTLYMEMLEQAVNALKDGKEPTLENLLQQQTEVDLKVPALL
PDSYIPDVNTRLSFYKRIASTTNIEQLDELQVELIDRFGLLPDAAKHLFSVQTIKQKAQQ
IGISRVDANPKGGYFEFTSQTKVNPMFIIGLIQSAPSIYKMDGASKLKFAIEANNGNERI
KMINAMIDDFTKKAAA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaggcacaatggcaagccttaccttgggtaaaatcaaagcaggataaaatccat
tgggggcaactaatcggcagtggactcagtttgtcacttgctaatgccattgaaaaacgc
gacgaactcgtcgttatcgtcacccaagacacgccttcggctttaaaacttgaaactgag
cttaactacctcctgtcaattccagttagggttttccctgactgggaaacgttaccttat
gaccatttttcgccgcatcaagacatcatttctcaacgtttagcgacactcaatgcattg
aagtcaactaaacacagtgtacttattgtacctgctgcaactcttatgttacgtacagcg
ccaaaatcgtttatacatggcacagcgttgcaatttaaagcgggccaaagcgtcgatata
gaacaattgcgacaagcgctgacggaatctggatacaggcatgtacaacaagtcatggaa
cacggtgaatacgctgttcgaggttctataatcgacttgtacccaatgggtagcgaaacg
ccgttcagactagacttctttgatgatgagctagatagcatacgagtgttcgaccctgag
acacagcgttcgcttgataaaatagatttcatagatttattaccggcacacgagttccct
accgcacagtcagatattgaacgttttcgtattcaatatcgtgctaaattcggtgcgagt
agcgaaagcgattcaatttacatgcaggtgagcaaaggtagtctacccgcgggaattgaa
tactattttccactattctttgaatcgacagcgactatttttgactaccttcctgatgat
gccactttcatgcatcttggagacgttgagcacgctgcaaattcgttttgggtcgatgtt
aataaacgctatgaaaatcgaagagtcgatcctctcagacctttactcgctccaaatgag
ctttatctgcctgtagatagcttgttcgaacaatttgggcactaccctaggatccgtcta
tcacttgcgccactaggaacacgtgctggtcatacaaatcttgattgtgcgctcattcca
gaattgaaaattgatcacaaattaactgatccatataaagcattactcaactttattgca
ctacagaaaaaacaaggcggtcgtgttctcttttctgttgaatcagatggccgcagagaa
tcacttttaacgttattaaagccaactgggctaaaacttaaatcgttcacccatctacaa
aagtttgtgtcagccaaagatgacgtcggtatcatagtcagtccgcttgaacaaagtgta
cttctctttggtgagttgcctcttaccgttataaccgaacaagaattactcggtgttaaa
atatctcaacgccgtcgtcgcaagcataagttcgatcaaggtcaagatgcgctcattcga
aacttagctgaacttaaagaaggtcaacctatcgttcaccttgatcacggcgttggtcgc
tatatcgggttacaaacaattgaagctaacggtatcgctactgagtttgtaacaataacg
tacgctaatgaagccaaattgtatgttcctgtaggttcactgcatttgttgagtcgttat
tcaggtggcgaagaagcccacgctcctctccataagctgggatcagacgtttgggaacga
gcgaaacgaaaagcggcggaaaaagtccgtgacgttgcagctgaactactggatatttac
gcaaagcgtcaaagcaagcctggttacgctttcaagttagaacaatccgcttatcgtgac
tttggggatagctttccatttgaggaaaccgacgatcaacggaatgcgatagaagcggtg
ttgatggatatgcaaagcccgcaggcaatggaccgattagtgtgcggtgacgttggcttt
ggtaaaacagaagtcgcgatgcgcgccgcgtttgtttcagtgaacgatggtaagcaagtt
gccgtacttgttccaacaacgttgcttgctcaacaacattatgaaaactttaaagatcgt
tttgccgatcttcccgttgaagtaggcgtattgtcacgttttaactcgacaaaagaacaa
aaagaaacactgacaaaacttgaagaaggcaaacttgatatcgtcattggaactcataaa
ctcctgcaagaagatattaaattctcggaccttggtttacttattgttgatgaagaacat
cgatttggcgtaagacaaaaagaaaaaattaagcagctccgtgccgatgtggacatctta
actcttacagcaacacctattccacgaacgttgaacatggccatgagcggtatgcgtgac
ttgtcgattatcgccacgccacccgctaaacgcttggccgtaaaaaccttcgttcgcgaa
cgcgaggacgaattaatccgagaagctgtattgcgtgaaattaaacgcggcggtcaagtc
tatttccttcacaataacgtggaaaccattgaaaaagtcgctgaagacattactcaactt
gttcctgaggcaaccgtcgccatcgcccatggccaaatgcgtgaaaaagaactcgaatca
ttaatgggcgatttctatcaccagaaatacaatgtcttagtatgtacgacaataatagaa
acggggatagatgtcccaacagctaacaccattatcatggacagagcggataaacttggt
ctagctcaaatgcatcagttacgtggacgtgtaggccgctctcaccaccaagcgtacgcc
tatttgcttacgaaacctgcgaatgcactcactcctgatgcggttaaacgtttgcaagca
atcgagtctcttgaagatttgggtgctggctttgccctagcaacacacgatttagaaatc
cgtggtgccggtgaattgttaggagatgaccaaagtggtcaaattcaaactatcggcttt
accctctatatggaaatgctagaacaagctgtaaacgcacttaaagacggtaaagaacct
acactagaaaacttgcttcagcagcaaaccgaagtcgatttaaaagtccctgctcttttg
ccagacagctacattccagacgtgaatacacgattgagcttctataaacgtattgcaagt
acaacgaatattgaacagctcgatgaattacaagtggaactgatcgaccgctttgggctg
ttacctgatgcagcaaaacatttattctctgtgcaaacaatcaagcaaaaagcgcagcaa
atcggcattagccgtgtcgatgcgaatccgaaaggtggttatttcgaattcacgtcacaa
acaaaagttaacccaatgttcattatcggtttgatacaaagtgcaccatctatttataaa
atggatggcgctagcaaattgaagttcgccattgaagccaataacggcaatgaaagaata
aaaatgataaatgccatgattgatgattttactaaaaaggcagcagcataa
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integrated database retrieval system
