Pseudoalteromonas xiamenensis: J5O05_10645
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Entry
J5O05_10645 CDS
T07215
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pxi
Pseudoalteromonas xiamenensis
Pathway
pxi03420
Nucleotide excision repair
pxi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5O05_10645 (uvrD)
03430 Mismatch repair
J5O05_10645 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxi03400
]
J5O05_10645 (uvrD)
Enzymes [BR:
pxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5O05_10645 (uvrD)
DNA repair and recombination proteins [BR:
pxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5O05_10645 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
J5O05_10645 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
AAA_12
Viral_helicase1
DEAD
AAA_22
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
QTH70450
UniProt:
A0A975HLW5
LinkDB
All DBs
Position
complement(2204151..2206316)
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQREAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQSSPYSILAV
TFTNKAAKEMRSRVEATLQGPVSGMWIGTFHGLSHRILRQHHKEANLPESFQVLDSDDQV
RMIRRLLKAMNIDEKKWPAKQFAWYIGAQKDEGRRPKDIQAFDLNEQLMLKVYAAYQDAC
DRAGLVDFAEILLRSYELLATQPTLLRHYQNRFAHMLVDEFQDTNRIQYLWLRLLAGGSR
SIMIVGDDDQSIYGWRGARVENIRQFLEDFDAHTIRLEQNYRSTATILKASNALISNNAE
RMGKSLWTDGVDGEPISIYAAFNELDEARFVVGKIKTWLQGGNALQECAVLYRNNAQSRI
LEEAFLQEGLKYRIYGGMRFFERQEIKDALCYLRLITNRNDDAAFERIINTPVRGIGDKT
LSHIRDCARNTSQPLWYAAKSVIAEKHLSGRAVNAVNQFLELVESLEQTIDELNLEQQAK
LTIERSGLMAMYQAEKGEKGRARVENLEELINACGQYEPPVEEEFSTPLQGFLAYTSLEA
GEGQAEEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSHEESGRLEEERRLCYVG
MTRAMTKLYICHAESRRLYGQEKYHSPSRFIRELPTDCVEEIRIKTQVTRPTSAGRFSAT
VTHAVFEDSGFTLGQRVLHAKFGAGTVLNYEGSGAQSRIQVNFDDVGSKWLVTAYARLQP
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcagaacttctcgatgggttaaatgacaaacaacgtgaagccgttgctgca
ccgctgcaaaacatgttggtgcttgctggcgcaggttcaggtaaaacacgtgtgcttgta
caccgaattgcatggttaatgcaggttgagcaaagttctccctacagcatcttggccgta
acgttcaccaacaaagccgccaaagaaatgcgcagtcgcgttgaggcgaccttacaaggc
ccagtgtcaggtatgtggattggtacgtttcacggcttatcacatcgaattttacgtcaa
catcataaagaagcgaacttacccgaatctttccaagtattagacagcgacgaccaagtc
cgcatgatccgtcgtttgctcaaagccatgaacatcgacgagaaaaagtggccagccaaa
caatttgcatggtacatcggcgctcagaaagacgaaggtcgtcgacctaaagacattcaa
gcgtttgacctcaacgagcaactgatgctcaaagtctatgccgcataccaagatgcatgt
gatagagctggcttagttgattttgccgagattttgctacgcagctacgagttacttgca
acacaaccaacgttattacgccattaccaaaatcgattcgcacatatgttggtggatgaa
ttccaagacaccaaccgcatccaatacctatggctccgtttgctcgccggtggcagcagg
tccatcatgattgttggtgatgacgaccagagcatttacggttggcggggcgcgcgcgtc
gaaaatattcgtcaattcttagaggattttgacgcacacaccattcgtctcgaacaaaat
taccgttccaccgcaaccattttgaaagcgtctaacgcgctgatttctaataatgccgag
cgaatgggcaaaagcctttggacagatggtgttgatggcgaaccgatttctatttatgcc
gcattcaacgagttagatgaagcgcgctttgttgttggaaaaatcaaaacgtggttgcaa
ggtggcaatgcgttgcaagaatgtgcggtgctttatcgcaacaatgcgcaatcacgtatt
ttagaagaagcctttctacaagaaggactaaaatatcgcatctacggtggaatgcgtttc
ttcgaacgccaagagatcaaagatgctttatgttaccttcgacttatcacaaatcgcaat
gacgatgccgcctttgaacgcattatcaatacgcccgtacgtggcattggtgacaaaacc
ttaagccatattcgagattgcgcacgaaacacgtctcaaccgctatggtatgcagccaaa
tcggttatcgcggaaaaacatttatccggtcgcgcggtcaacgcggtaaaccagttcctt
gagcttgttgaatccttggaacaaaccattgatgaattaaatttagaacaacaagccaaa
ctgaccattgagcgctcaggcttgatggccatgtaccaggcagaaaaaggtgaaaaaggc
cgtgcacgtgtagaaaacttagaagaattaataaacgcatgtggtcaatatgaaccgcct
gtggaagaagaattctcgacgccgttacagggcttcttagcttacacttcactggaggcg
ggcgaaggtcaagctgaagaacacgaagacgcggtacaaatgatgacgctgcattcagcc
aaaggtcttgagtttccattggtctttatggtcggcgttgaagaaggcatgttcccgtca
cagcaaagccatgaagaatctggtcgacttgaagaagagcgacgcctttgctacgtgggc
atgacgcgtgcgatgacaaagctttatatttgtcatgcagaaagccgtcgtttgtacgga
caagagaaataccatagcccttctcgctttattcgtgagttaccaacagattgtgtggaa
gaaatccgcatcaaaactcaagtgactcgcccaacatcggctgggcgcttcagtgctacc
gttacgcatgcggtattcgaggatagtggctttacgttgggtcaacgtgttttacatgcc
aagtttggtgctggcacggtattaaattacgaaggcagcggcgcacaatcacgtatccaa
gtgaattttgatgatgtcggttctaaatggttagtcaccgcttatgcgcgacttcaacca
ctttaa
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