Pseudoalteromonas xiamenensis: J5O05_11745
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Entry
J5O05_11745 CDS
T07215
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pxi
Pseudoalteromonas xiamenensis
Pathway
pxi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5O05_11745 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxi03021
]
J5O05_11745 (rpoB)
03400 DNA repair and recombination proteins [BR:
pxi03400
]
J5O05_11745 (rpoB)
Enzymes [BR:
pxi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5O05_11745 (rpoB)
Transcription machinery [BR:
pxi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5O05_11745 (rpoB)
DNA repair and recombination proteins [BR:
pxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5O05_11745 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QTH70616
UniProt:
A0A975HK33
LinkDB
All DBs
Position
2412827..2416852
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYLEKKRIRKDFGKRPQVLDIPFLLSMQLESYKKFLAADPDGDHGLEAAFRSVFPIK
SYSGNAELQYVSYRIGEPVFDVKECQIRGVTYAAPLRVKLRLVLMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLYVRIDRRRKLPASIILRALEFTTEEVLALFFETTTFEVQGGKVMMEL
VPSRLRGETAVFDIKDPSGEVLVEAGRRITARHIKNIEKLGISQLEVPHEYVIGRVLAKN
YVDESTGEIIAEANAELSLELLAELVKAGYTQIATLYINEVDSGPYMSETLRIDSTNNRL
EALVEIYRMMRPGEPPTKEAAEALFDNLFFSEERYDLSTVGRMKFNSRVGYDTDEGLGTL
SKEDIVSVMKVLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVNGVVS
DEVDYLSAIEEGQYVIAQANTTLNDNNEFTDELIPCRFKGESTFMGQADIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIELTLAKDSGVTIVAKR
GGVVKYADASRIVINVNDDERVPGEAGIDIYNLTKYTRSNQNTCINQKPTVMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVDQDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEVEEMQLREAKKDF
NEEFRILEGGILARARSLLVAAGVSEEKLEGLNAEKLLTQSLADEEKQAELEQLAAQYDE
VKAEYDKKFEDKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISNIV
PIEDMPYDEKGRPVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERIEDMIKEQAKLAE
IRDFLKKVYELGDCRQKVDIDTFSDEEVRRLAEHLKGGLPIATPAFDGAKESEIKELLEL
GGYPSSGQITLFDGRTGDSFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttatcttgaaaagaaacgtatccgtaaggattttggcaaacgtccacaa
gttttggacataccgttcttgctgtcaatgcagttggaatcgtataaaaaattcttagca
gcggaccctgatggtgatcacggattggaagcggctttccgttcagtgttccctatcaag
agctactcaggtaatgctgagctccagtacgtaagttatcgtattggcgagccggtgttc
gatgtgaaagaatgtcaaattcgcggtgttacatacgcagcgccattgcgtgtaaagttg
cgtctagtccttatggacaaagaagcaccaggcacagtgaaagacattaaagaacaagaa
gtgtatatgggcgaaattccgctcatgaccgacactggtactttcgttatcaacggaacg
gagcgtgtaatcgtttctcagttgcaccgtagccctggtgtgttcttcgataacgaccgt
ggtaaatcgcactcgtcaggcaaagtactgtataacgcgcgcgtaattccttaccgtggt
tcatggttagacttcgaattcgacgtaaaagataacctttacgttcgtatcgaccgtcgc
cgtaaattaccagcttctatcattcttcgtgctcttgagttcactactgaagaagtacta
gccctattcttcgaaacaacaacgttcgaagttcaaggcggcaaggtaatgatggaactt
gttccatcacgtttacgtggtgaaacagctgtttttgatattaaagatccgtcaggtgaa
gtgcttgtagaagcaggtcgtcgtattacggctcgtcatatcaagaacatcgaaaagtta
ggtatttcacagttagaagttcctcacgaatatgttattggccgtgtgcttgcgaaaaac
tacgttgacgagtcaacgggtgaaatcatcgctgaagcaaacgctgagctgtcactagag
ttgttagctgagcttgtaaaagcgggctacacacaaatcgctacgttgtacatcaacgaa
gtagacagcggtccatacatgtcggaaacgctacgtattgactcaacaaacaatcgttta
gaagcacttgtggaaatttaccgcatgatgcgccctggcgagccaccaacgaaagaagca
gcagaagcgttgtttgacaacctattcttctctgaagagcgctacgatctttcaactgtt
ggtcgtatgaagttcaatagccgtgtaggttatgacacagacgaaggcctaggcacacta
agcaaagaagatatcgtttctgtgatgaaggtacttatcgacatccgtaacggtaaaggc
gaagtcgatgacatcgaccacttaggtaaccgtcgtattcgttctgttggtgaaatggca
gaaaaccaattccgcgtaggtttagtacgtgttgaacgtgctgtacgcgaacgtttaagc
cttggcgatcttgacgcagttatgccgcaagacttgatcaatgcgaagccaatttcagca
gcagttaaagaattctttggttcttcacagttgtcacagttcatggatcaaaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcattaggcccgggtggtttgacacgt
gagcgtgcaggcttcgaagtacgtgacgttcacgtaacgcactacggacgtgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtcttatcaactcactttcaacatacgcacgt
acaaacgactatggtttcctagaaacaccatatcgtaaagttgttaatggtgttgtgagt
gacgaagttgattatttatcagctatcgaagaaggccaatacgttatcgctcaggctaac
acaacgctgaacgacaacaatgaatttactgatgagcttatcccatgtcgtttcaaaggc
gaatcgacgtttatgggtcaagcagacatccagtatatggacgtatctccacagcaggtt
atctctgtggctgcggcacttatcccattcctagaacacgatgacgctaaccgtgcattg
atgggatcgaacatgcaacgtcaagctgtaccgacgctacgcgctgataagccgttagtt
ggtactggtatcgagttaacgcttgcgaaagactcgggtgtaacgattgttgcaaaacgt
ggcggtgtagtgaaatacgctgatgcgagccgtatcgtaattaacgtaaatgacgatgag
cgcgttccaggtgaagcgggtatcgacatctacaacttgactaagtacacacgttctaac
caaaacacgtgtatcaaccaaaaaccaactgtgatggttggtgagccggttgtacgtggt
gacgtacttgctgatggtccttcaacagacctaggtgacttagcgcttggtcaaaactta
cgcgtggcgttcatgccgtggaatggttacaacttcgaagactcgattttattatctgag
cgcgtagttgaccaagatcgtctaacgactatccacattcaagaactacagtgtatcgct
cgtgacacgaagttaggcccagaagaaattactgcggatattcctaacgtcggtgaatct
gcactaagcaagcttgacgaatcaggcgttgtttacatcggtgcggaagttaaaggcggc
gatattcttgttggtaaagttacacctaaaggtgaaacgcaacttactccagaagaaaag
ctactacgtgctatcttcggtgagaaagcatctgacgttaaagacagctcgctacgtgta
ccaaactcagtatctggtactgtaatcgacgttcaagtatttacccgtgacggcgtagag
aaagataagcgtgcgcttgaagttgaagagatgcagttgcgtgaagcgaagaaagacttc
aacgaagaattccgtattcttgaaggcggtatcctcgcacgtgctcgttcgctacttgta
gcagctggcgtgagtgaagagaagcttgaaggcttgaatgctgaaaaactactgacgcaa
agccttgcggatgaagaaaagcaagctgagctagagcaacttgctgcacagtacgatgaa
gttaaagctgagtacgacaagaagtttgaagacaaacgccgtaagatcacacaaggtgat
gatctagcacctggcgtattgaagattgtgaaagtttacctagcggtcaaacgtcgcatt
caaccaggtgataaaatggcgggtcgtcacggtaacaagggtgttatctcaaacatcgta
ccaatcgaagacatgccatacgacgaaaaaggtcgtccggtagacatcgtattgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcttagaaacgcacatgggcctagca
gcgcgtggtatcggtgagcgtatcgaagacatgatcaaagaacaggcaaaacttgctgaa
attcgtgacttcttgaagaaagtttacgaattaggtgattgccgtcagaaagtggacatt
gacacattctctgacgaagaagttcgccgtttggctgagcacctgaaaggtggtctacca
atcgcaacgcctgcgttcgatggtgcaaaagaatctgaaattaaagaacttctagaactt
ggtggctacccatcaagcggccaaatcacgctatttgatggtcgtacaggtgattcgttt
gagcgtcctgtaacagtaggttacatgtacatgctgaaacttaaccacttggttgatgat
aagatgcatgcgcgttctactggttcttacagcctagttactcaacagccgttgggtggt
aaggctcagttcggtggtcagcgtttcggtgagatggaggtatgggcactagaagcatac
ggtgctgcctacacgctacaagaaatgttgacagtgaagtcggatgacgtgaacggtcgt
acgaagatgtataagaacatcgtcgatggcaaccataagatggagccaggtatgccggaa
tcgttcaacgtattgttgaaagaaatccgctcgctcggtattaacatcgagttagaagaa
ctttaa
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integrated database retrieval system
