Pseudoalteromonas xiamenensis: J5O05_11945
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Entry
J5O05_11945 CDS
T07215
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pxi
Pseudoalteromonas xiamenensis
Pathway
pxi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5O05_11945 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxi03021
]
J5O05_11945 (rpoA)
03400 DNA repair and recombination proteins [BR:
pxi03400
]
J5O05_11945 (rpoA)
Enzymes [BR:
pxi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5O05_11945 (rpoA)
Transcription machinery [BR:
pxi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5O05_11945 (rpoA)
DNA repair and recombination proteins [BR:
pxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5O05_11945 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QTH70647
UniProt:
A0A975HK80
LinkDB
All DBs
Position
2457700..2458686
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AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVEIEAVSPSRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVSLEGKDEVFLTLTKSGLGPVTAADIQHDGD
VTIANPEHVICHLTADNAEISMRIRVQRGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLEAFVDLRDVSEP
EAKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaaccgaattcctaaagccaaggttagtcgagattgaagcagtaagt
ccatcacgttctaaagttgttttagagccgttggagcgtggctttggtcacacgctaggt
aacgcattacgtcgtatcctactttcgtcaatgccaggttgtgcagtgactgaagttgaa
atcgatggtgtgttgcacgagtacagcgcgaaagaaggcgtacaagaagacatcattgaa
attctgttaaaccttaaaggtctggcagtatctctagaaggtaaagatgaagttttcctt
accctgactaaatctggcctaggccctgtgactgcggctgacatccagcacgatggtgat
gttactatcgctaacccagagcacgttatttgccatttaacagcagataacgctgagatc
agcatgcgcattcgtgtacagcgtggtcgtggttatgtgccagcgtcaagccgcttatcc
tctgatgacgatgagcgtccaatcggtcgtctgttgcttgatgcatcattcagcccggtt
gagcgtattgcgtactcggttgagtcagctcgtgttgagcagcgtacagatttagacaag
ttaatcattgatatggagactaacggtactttggatcctgaagaagcgatccgccgtgcg
tcaactatcctagctgagcagctagaagcgttcgtagatttacgtgacgtttctgagcca
gaagcgaaagaagagaagcctgaattcgatcctattctgcttcgtccagttgatgatctt
gagctgactgttcgttctgcaaactgtctgaaagccgagcaaattcaatatattggtgac
ttagtacaacgtaccgaagttgagcttcttaaaacgccaaaccttggtaagaagtctcta
actgagatcaaagacgtactagcttcacgtggtctttctctgggcatgcgcctagaaaac
tggccacctgcaagtctagctgagtaa
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