Pseudoalteromonas xiamenensis: J5O05_13455
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Entry
J5O05_13455 CDS
T07215
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pxi
Pseudoalteromonas xiamenensis
Brite
KEGG Orthology (KO) [BR:
pxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pxi03009
]
J5O05_13455 (srmB)
Enzymes [BR:
pxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5O05_13455 (srmB)
Ribosome biogenesis [BR:
pxi03009
]
Prokaryotic type
rRNA helicases
J5O05_13455 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTH70888
UniProt:
A0A975DFI6
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All DBs
Position
complement(2800698..2801924)
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AA seq
408 aa
AA seq
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MQFSDFDLDAKLLAAINKMGFKNATSIQQLAIPEALIGRDILASAPTGTGKTAAFLIPAI
QYLLDFPRKDPGFARVLIMTPTRELAYQIFEQCQLLAANTHLKIGVVTGGINYGSHKEIF
EKNNDILIATPGRLMEYLETENFHAENVELLVLDEADRMLDMGFRKEMLRICDEAKNRRQ
CFLFSATLEGDSVELFAERILNDPALLEAEPSRKEKAKIHQWIHLADDYEHKLAVLSHML
KQEDVTKAIVFVKTRERLEKLVGELSSREIRVTWLRGEMPQDKRMKAMEAFHSGRTSILV
ATDVAARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGTAISLVEAHDMAVLGKV
ERYTDQKLKRRSIEGLEAKHKEATLPKKKKDPAKIKAKKKARKKAAKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttagtgatttcgacttagacgccaaacttctggcagcgattaataaaatgggg
tttaagaatgccaccagcattcagcaattagctatccctgaagccttgattggtcgcgat
attttagcatcagcaccgacaggtactggtaaaacagcggcttttttaatccctgccatt
caatacttactggattttcctcgtaaagatccagggtttgcgcgtgtcctaatcatgaca
cctacgcgtgaattggcttatcaaatttttgaacagtgccaacttcttgctgctaataca
cacctaaaaatcggagttgtaaccggtggtatcaactacggcagccacaaagaaatcttt
gaaaagaacaacgatattctaattgcgacgcctggtcgtttgatggaatacctagaaaca
gaaaacttccacgctgagaatgtggaattactggttcttgatgaagcagaccgcatgctc
gacatgggctttcgtaaagaaatgctacgcatttgtgatgaagcgaaaaaccgtcgtcaa
tgcttcttgttctctgcaacacttgaaggggatagcgttgagttatttgctgaacgcatc
ttaaatgatccagcgctccttgaagcggaaccatcgcgtaaagaaaaagcaaaaattcat
cagtggatccacttagctgatgattacgaacataaattagcagtcttgtcacacatgctt
aaacaagaagacgtgactaaagcgattgtgtttgtgaaaacacgtgaacgcttagagaag
ctagttggtgaactttcttctcgcgaaatccgcgtcacgtggcttcgtggtgaaatgccg
caagacaaacgtatgaaagccatggaagcattccatagtggccgcacaagtatactcgta
gctaccgatgttgcagctcgaggtatcgacgtggctgacatcagccatgttattaacttt
gacatgccgcgcacagcagacgtatacgttcaccgtattggtcgtaccggtcgcgctggt
aaaaaaggcactgcgatttcactggttgaagcacatgatatggctgtgcttggtaaagta
gaacgttatacagaccagaaactcaaacgtcgcagtattgaaggtttagaagcgaaacac
aaagaagccacgctgccgaaaaagaaaaaagatcctgcaaaaattaaagcgaagaaaaaa
gcacgcaaaaaagcagctaagaaataa
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