Paenibacillus xylanexedens: BS614_00695
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Entry
BS614_00695 CDS
T04676
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS614_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxl03019
]
BS614_00695
03009 Ribosome biogenesis [BR:
pxl03009
]
BS614_00695
Enzymes [BR:
pxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS614_00695
Messenger RNA biogenesis [BR:
pxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS614_00695
Ribosome biogenesis [BR:
pxl03009
]
Prokaryotic type
rRNA helicases
BS614_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APO42742
LinkDB
All DBs
Position
complement(195288..196895)
Genome browser
AA seq
535 aa
AA seq
DB search
MANFEQLGIRPEWCEILKHQGIAVPTPVQERSIPVLLGGRDIIAEAQTGTGKTLAFLLPI
IQKINVSDRSPQALIIAPTRELALQITEEAKKLTANDDKLHVLAVYGGQDVDKQLRKLQN
GTQIVIGTPGRLLDHLRRGTLKLDNVKKLVLDEADQMLHMGFLDDVETILSELPHKRQTM
LFSATMPKGIRNLAKTYMKDPEDVKVSSQSVIPIKQIRQQVLECTDRGKLEALRGMIDTY
RPYLAIIFCRTKRRASKLNQDLREAGYASDELHGDLSQSKRENVMKAFRDAKLQVLVATD
VAARGLDVEGVTHVFNYDMPHDAESYIHRIGRTGRAGGTGLAVTFATEHDRPELARIEQG
IDQKLSRIQWTSEGPIASTGAARRSINSQGDDERSGGRSSGTGSARRGAGRNDRRDGGRG
GRGSRGGEGGRSEGGRSGGRSGGRSSDSSRGAAGQGGRGAGRSGDERSAGRGSARSSDSS
RGAAGQGGRGAASSGWAGRSADKRTSGRSSEGSRRPESAGRGPAKGDRRDSRRGR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaactttgaacaactgggcattcgcccggaatggtgcgagatcctgaaacatcag
ggcatcgccgtgccgactccggtacaggagcgttcgattccggtactgctgggtggacgc
gatattatcgctgaggcacagacaggaacagggaaaacgctggcatttttgctaccgatt
attcagaaaattaacgtatccgaccgttcgccacaagcgctgattatcgcgcctacgcgt
gagcttgcgctgcaaattacggaagaagcgaaaaagctcacggcaaacgacgataaactg
cacgtgcttgccgtatacggcgggcaggatgtggacaagcaactgcgtaaattgcagaac
ggtacccagatcgttattggtacaccgggtcgtctgctggatcacctgcgccgtggcacg
ctgaagctggataatgtgaaaaaactggtgttggatgaagccgaccaaatgctgcacatg
ggctttctggacgatgtggagacgattcttagcgagctaccacacaaacgtcagacaatg
ctgttctcagcaacgatgcctaagggcattcgtaacctggcgaagacctacatgaaagat
ccggaagatgtgaaggtatcttctcaatctgttattccgatcaaacaaattcgccagcaa
gtgctggaatgcacggatcgtggtaaattagaagcgcttcgcggcatgattgatacgtat
cgcccatacttggcgattattttctgccggaccaagcgtcgtgcatccaagctgaaccaa
gatctgcgtgaagcaggttatgcaagtgatgaacttcatggagatctgtcccaatccaag
cgtgagaacgtaatgaaagcgttccgcgatgccaaactgcaagtgctggttgctacagat
gtagctgcacgtggacttgatgttgaaggtgtcacgcatgtatttaactacgatatgccg
catgatgcggaaagttatatccaccggattggtcgtacaggccgtgcaggcggtacaggt
cttgctgtaacgtttgcaacagagcacgacagaccggaacttgcacgtattgaacaaggg
atcgaccagaagctgtcccgtatccagtggacaagcgaaggtccaattgcttcaactgga
gcagctagacgttccatcaacagtcaaggggatgacgaacgttcaggcggacgctcttcc
ggaactggtagtgcccgtcgcggtgcaggccgtaacgatcgcagagatggcggacgtggg
gggcgtggttcccgcggtggcgaaggtggccgcagtgaaggcggacgcagtggtggtcgt
agcggtggccgcagcagcgacagcagtcgcggagcagcaggtcaaggtggacgcggtgcg
ggtcgcagtggcgacgagcgcagcgcaggtcgtggttccgcgcgcagcagcgacagcagt
cgtggtgcagcgggtcaaggcggacgcggtgcagctagcagcggctgggctggccgtagt
gccgacaagcgcacctccgggcgcagcagcgaaggctctcgccgtccggaatccgcagga
cgcggaccggcgaagggtgaccgtcgcgattctcgtcgcggacggtaa
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