Paenibacillus xylanexedens: BS614_03245
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Entry
BS614_03245 CDS
T04676
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS614_03245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxl03400
]
BS614_03245
Enzymes [BR:
pxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS614_03245
DNA repair and recombination proteins [BR:
pxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BS614_03245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
APO43171
LinkDB
All DBs
Position
766657..770184
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFSKDPDFGSITAGIKSGMKEQLVSGLSGSARQIMLAALHQEMNRPLLVVTHN
MFSAQKIAEDLQEALSPDQVLIYPANELVAAEAAVSSPETLGQRIDVLVRCAQGFRGVVV
IPFSGVRRYVPLPEVMANARILIKQGNTLQLDSFLLEMVKLGYERVERVESRGEMSVRGG
IIDFYPVTSSIAYRVELFDDEIDSIRTFDPADQRSIERIEEITVLPCKELIADRERMEKA
ADAAALLLEQQLEKMTDRQAKLRLREEIHREIELLREHVYFSEMYKYISPLYPENKTIYD
YMPEDTLLVLDEPARLSETSKQLDRDESEWNLHLMQNGKTLPDLPLSADGDELLYERPFQ
TLFMSIFLRQVPHTQPQNILNFISRGMQDFHGQMNVLKAEMERWQKAGVKVLMLANGEER
LERMRRVLMDYDIPEPEMMIGNLQTGFEMPSIHLAVVTEGEMFSQKQRKVRKPIRNVDNA
ERIKSYSELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNEWTRVKNKVRTSVQDIADDLIKLYAERQTSKGFGFDKDSA
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHFETFRERFSGYPFNIHVLSRFRSRKEQNETAKGIKAGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISELVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEPVPSDQWNTTLDLS
IDAYLPSDYIYDSIQKIEIYKKVAVIASFDDAMELEDELVDRFGDLPEAVINLLAVARMK
VYGKIYGIESISQRGEDITVKFYEGREHAFELSKIAHIGNQFERRVQFEQGPHMLIHAKG
KGLGDKQLMELVEKILESMKTAFKSKGELKDVTKV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatacaggctttttccaaagatccggacttcgggtccattacagcc
ggaatcaagtccggcatgaaggaacaattggtttcgggtctatccggctcggcgcgtcag
attatgctggctgctctgcatcaggaaatgaaccgaccattgctcgtagtaacacataat
atgttttcagctcaaaaaattgcagaagatttacaggaagcgctttcacctgatcaggtg
ttgatctatcctgccaacgaacttgtcgctgcggaagctgctgtttccagcccggaaaca
ttgggtcagcgtattgatgtgttggtccgctgcgcccagggattcaggggcgttgttgtt
attcctttttccggggttagacgttatgttccgcttccggaagtgatggccaatgctcga
attttgatcaaacagggtaacacacttcaactggactccttcctactggagatggtaaag
ctcggatacgagcgtgtggaacgcgtggaatctcgtggtgagatgagtgtacgcggaggt
atcatcgacttctatccggttacttcatcgatcgcatatcgggtggagttatttgatgat
gagatcgactccattcggacatttgacccagcggatcagcgttcgattgaacggattgaa
gaaattacggttttaccatgcaaggagttaattgcagatcgtgaacgtatggagaaggct
gccgatgcggctgctcttttgctggagcaacagctggagaaaatgacggaccggcaggcg
aagctgcgtcttcgtgaggaaattcaccgggagatcgagcttttgcgggaacacgtgtat
ttctccgaaatgtataaatatatttctccgctctatccagagaacaaaacgatctacgac
tatatgccagaagataccctgctggttcttgatgagcctgccagactatcggagacatca
aaacagctggaccgtgatgaatcagagtggaacctgcatttgatgcaaaacggaaaaaca
cttccggatcttccattatccgcagacggtgatgaactcttgtatgagcgtccattccag
acgctgtttatgtcgatctttttgcgccaagttccacacacccaaccacagaacattctg
aacttcatcagtcgtggcatgcaggatttccatggacagatgaacgtactgaaggcagag
atggagcgttggcagaaggccggagtcaaagtgctcatgctggcgaacggtgaggagcga
ctcgagcggatgcgccgggtactgatggactatgatattccagagccagagatgatgatc
ggtaatttgcaaacgggatttgaaatgccgtccattcatttggctgttgtgaccgagggc
gagatgttctcgcaaaaacagcgtaaagtacgcaaaccgattcggaatgtagataatgct
gaacggatcaaatcctatagcgagctaaaagtgggcgattatgtcgttcaccagaaccac
gggattggtaagtacctggggatcggcaccctcgaggttggcggtattcataaggactac
atgcatattctctatgcgggtggagacaaactgtctgtacctattgagcagatcgatctg
attcagaaatatgttggttccgaagagaaagaaccaaaaatatacaagctgggcggcaat
gagtggacacgggttaaaaataaagtccgcacatctgtacaggatattgctgatgatcta
attaagctgtatgcagagcgtcagacctccaaagggtttggattcgacaaggattctgcg
gagcagcaggagtttgaggacatgttcccttacgatgagacacgtgatcaggtgcgtgcg
atcgaagaaatcaaaaaggacatggaacaaaaccgtccaatggatcgtttattgtgtggg
gatgttggttacggcaaaaccgaggtggctattcgggctgcatttaaagcagctattgaa
ggcaagcaggtggctgtcctcgtgccaacaaccattttggcacagcagcattttgagacg
ttccgtgagcgcttctccggttatccatttaacattcatgtgcttagccggttccgctcc
cgtaaagagcagaatgaaacagccaaaggcatcaaggcaggcacagtggatattgtcatc
gggacgcatcgattgctgtcgcaggatctggtcttcaaggacctgggactgctcattgtt
gatgaagaacagcgcttcggtgtaacccataaggaaaaactgaagaagctgaaaaccaat
gtggacgtgctgacgctgacggcaacgccgattccgcgtacgcttcatatgtccatgctg
ggtgtgcgtgatctgtccgttatcgagactccaccagagaatcgtttcccggtgcagacc
tatgtggttgaacacagccaggcacttgttcgtgaagcgattgagcgtgagcttgcccgt
ggtgggcaagtgtattacctctacaaccgtgttcagggaattcaggagatggctgccgaa
atttctgaacttgtgcctgaagccaaagttggtgtgggacatggtcagatgtcggaaaca
gagctggagaaaacgattctggacttcctggatggtgaatatgacgtgcttgtgagcaca
agtatcatcgagaccggggtagatattccaaacgtaaatacactgatcgtacatgatgcg
gataaaatgggactctcccagctgtatcagctgcgcggacgtgtgggtcgttccaaccgt
attgcgtacgcctattttacgtaccaacgggataaagtgcttactgaagttgctgagaaa
cgtctgcaatcaatcaaagaattcaccgaactgggttcaggattcaaaatcgccatgcgt
gacttgtcgattcgtggtgcgggaaatctgctaggagcggagcagcatggtttcatcgct
tccgtcgggtttgatctgtattcccagatgctcgcagaggagatcaacaaacgcaaagtt
acgatgcttggcgaggagccggtaccttcagatcagtggaacacaacgctggatctcagt
atcgatgcctacttgccgtccgattatatctatgacagtattcagaagattgagatctac
aaaaaagtggcggttattgcatctttcgacgatgcgatggagttggaagacgaattggtt
gaccgattcggtgatcttccggaagccgtcattaacttgctggctgttgcgcggatgaaa
gtatacggcaaaatctacggtattgagtccatttcccaacgcggtgaggacattaccgtg
aagttctatgaagggcgtgaacatgcctttgaactctcgaaaatcgcgcacattggaaat
cagttcgaaagacgtgtacaatttgaacaaggaccccatatgctgattcacgctaaaggc
aaggggcttggggataagcaactgatggagctggtagagaaaattctggagtccatgaaa
actgcttttaaatcaaagggggaactaaaggatgttaccaaagtataa
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