Paenibacillus xylanexedens: BS614_03975
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Entry
BS614_03975 CDS
T04676
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS614_03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxl03019
]
BS614_03975
03016 Transfer RNA biogenesis [BR:
pxl03016
]
BS614_03975
Enzymes [BR:
pxl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BS614_03975
Messenger RNA biogenesis [BR:
pxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BS614_03975
Transfer RNA biogenesis [BR:
pxl03016
]
Prokaryotic type
tRNA degradation factors
BS614_03975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
APO43291
UniProt:
A0A1L5LIS6
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All DBs
Position
916654..919443
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AA seq
929 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFAIEDAADFKAFLIMLNTLEESGKVLLTRNNRY
GMPERMDLVRGRLQAHAKGFAFLIPEDREHPDVYIHANDMKSAMNGDTVLVKVTSQGPSG
GRLEGEIVRIVTRAVTQVVGVFQSHEVYGFVIPDDKRINRDIFIPRTNFAGAVDGQKVVA
KIVSYPEGRAAAEGEVIEILGHKDEPGIDILSVIRKHQLPEAFPDEVVEEAEKAPESITD
EEIVQQGRRDLRGLNIVTIDGEDAKDLDDAVNVEKLPNGNYRLGVHIADVGYYVQENSKL
DQEAYNRGCSVYLVDRVIPMLPQRLSNGICSLNPQVDRLTLSCEMEFNDQMKVVKHDIFT
SVIKTKERMTYSNVRKILEGEEPELLERYKDLVDDFHLMKEIALKLRAMRMRRGAVDFDF
EESKIIVDAECKPVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFIYRVHEDPDQ
EKLQNFLAFAANFGHQVKGRGNAIHPRALQSLLEDIKETKEQTVISTMMLRSMKQAKYDS
EMSGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVIENNGALPENRQEYLAARMSDIAQQ
SSERERVAVEAERDTEKMKKAEYMLDKVGEEFEGMISSVTSFGMFIELENTVEGLIRLSA
LTDDYYHFDDQHMALIGERTSKVFRIGDEVKIRVARVSMEEYTIDFEMVDMKPRGERPGG
FGGGRGGKGGRPSSGGGRGGAKGGPGGFSGSRGGKGSSSAAGVSRGGRSTEESSKGGRGG
GAASAGAGAGSSGGYAGKGGGKPKGERRASDAGGSTGRGKGAVSFGFGSGKGGYSSTSGG
SDSSSTGGQGSGLNSGSGRGEGSFKSGKGGSKGGKGGSGRKNTSPSGVFIGENATPGGAQ
EGGAPRRKRKKSKGAAGNGTAAFVRKKKK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgataacagaacaacaattgctcgacttcatgcgggaaaccgcttataaacctatgact
tatcaggagttggaacagcacttcgctattgaagatgcagctgatttcaaagcctttttg
attatgcttaatacgctggaggaatccggtaaagttttgctgacccgtaacaatcgctat
ggcatgccagagcgcatggatttggtacgtggacgtttacaggctcacgccaaaggtttt
gctttccttatccctgaggatcgggagcacccggatgtgtacattcacgccaatgatatg
aagagtgcgatgaatggtgacacggtattggttaaagtcacatctcaaggaccttcaggt
ggtcgactggagggtgagattgtccgtattgttactcgtgctgtgacacaagtcgttggt
gtgttccaaagccatgaggtgtacggatttgtcattccggatgataaacggattaatcgc
gatattttcatcccacgtaccaactttgctggggcggttgatggacaaaaggtcgtagca
aagatcgtcagctatccggagggccgtgcggcagccgagggtgaagtgatcgagattctc
ggtcataaggatgagccgggtattgatattttgtccgtcattcgcaagcatcagttgcct
gaagctttccccgatgaagtggtagaagaggcggaaaaagcacctgaatccatcacggat
gaagagattgtacaacagggtcgccgtgatctgcgcggacttaacattgtcacgattgat
ggcgaagatgccaaggatctggatgatgctgttaacgtagagaagctgcctaatggtaac
tatcgtctgggtgttcatattgccgacgttggctattatgtacaggagaattccaagctt
gatcaggaagcttacaaccgtggatgcagtgtgtatctggtggatcgggttattccgatg
ttgccacagcgtctgtccaacgggatctgtagtttaaacccacaggtagatcgcctgacc
ctgtcatgtgaaatggagtttaacgaccagatgaaggttgtaaaacatgacattttcaca
agtgtaatcaaaaccaaagagcggatgacgtattccaacgtccgtaaaatccttgaaggt
gaagagccggaattgctcgagcgatataaggatctggtagatgatttccatttgatgaaa
gagattgccttgaagctgcgtgctatgcgtatgcgccgtggtgcggttgactttgatttt
gaagaatccaaaatcattgtggacgcagaatgcaaaccggtagatatcgtgaaacgggag
cgttcgattgccgagcaaatcattgaggaattcatgttggcagcgaacgaaacagtggca
gagcatttccactggttgaaggttccgttcatctatcgtgtgcacgaagatcccgatcag
gaaaaactgcaaaatttcctcgcctttgcggcgaattttggacaccaggtcaaaggacgt
ggcaatgcgattcatccacgtgcgcttcaatcgttgcttgaggatatcaaagaaacgaaa
gaacaaaccgtgattagtacgatgatgctccgttcgatgaaacaggcgaagtatgattct
gaaatgtcgggtcactttggcctcgcggcagaattctatagtcactttacgtctccaatt
cgtcgttatcccgatcttgtcattcaccgggtgattcgcgaagtcattgaaaataatggt
gctttgccggagaaccgtcaggagtatttggcagcacgtatgtccgatattgcgcagcag
tcttctgaacgtgaacgtgtggcggtagaagctgagcgggatacggagaaaatgaaaaaa
gccgagtacatgctcgacaaagtaggcgaagagttcgaaggcatgatcagcagtgtgacc
agctttggtatgttcattgaactggagaacacggttgaaggtctgattcgcctgagcgca
ctcacggacgactattaccattttgacgatcagcatatggctctgattggtgaacgtacc
tcgaaagtcttccgcatcggtgatgaagtgaagatccgtgtggcacgtgtaagcatggaa
gagtatacgattgattttgaaatggtcgatatgaaacctcgcggtgaacgtcctggcggc
ttcggtggcggacgtggcggtaaaggtggacgtcctagtagcggcggcggacgcggtggt
gccaagggtggaccaggtggattcagcggttcgcgtggcggcaaaggcagctcatccgct
gctggagtcagccgtggtggcagatcaacggaagaaagcagcaaaggtggacgtggcggt
ggagcagcaagtgcaggcgcgggcgcaggttcatctggtggctacgcaggtaaaggcggc
ggcaaaccaaaaggtgagcgtcgtgctagtgatgctggtggatcaactggccggggtaaa
ggcgcagtgagctttggttttggctcaggtaaaggcggatatagctctacatcgggtggt
tcggatagtagttcaaccggtggacaaggaagtggtctgaacagcggcagcggtcgcggt
gaaggaagctttaagtctggcaagggcggcagtaaaggtggcaaaggcggaagtggacgc
aaaaacacttcgccaagcggcgtatttattggagagaatgcaactcctggtggcgctcag
gaaggcggagcaccacgacgcaagcggaagaagagcaaaggtgcagctggtaacggcacg
gcagcttttgtacggaaaaagaaaaaataa
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