Paenibacillus xylanexedens: BS614_12310
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Entry
BS614_12310 CDS
T04676
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pxl
Paenibacillus xylanexedens
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pxl03016
]
BS614_12310
Enzymes [BR:
pxl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BS614_12310
Transfer RNA biogenesis [BR:
pxl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BS614_12310
Prokaryotic type
tRNA splicing ligases
BS614_12310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APO44705
LinkDB
All DBs
Position
2739633..2740853
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AA seq
406 aa
AA seq
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MRIVDNIKVWGEPLENAVSQAVTCSQYGDVLGVALMADHHKGYSQPIGGVVAYRNMISPS
GVGYDIACGNKAVRTDLMWEDIRDQIVTIMDDINSTISFGVGRNNPTPVDHELFDDASWK
LFDTIEPGLQHKLKTLARNQLGTVGSGNHFVDIFVEEATGKVWIANHFGSRGFGHKVASG
FLNLAAGRQFSGKAPGESMDQPPTLFDLNTEMGDIYWDGMILAGRYAYAGRDYVIEQVLG
ILGASAEYAVHNHHNFAWKEQHMGEEVVVVRKGATPLAPGQLGFVGGSMGDISVIVEGIH
SEENTESFRSTVHGAGRTMSRTQAAGKMNYKLRTRMGGEISEAQMHEAIRAYGVELRGAG
TDESPFVYKKLQDVLNAHANTLKINHVLRPVGVAMAGGNEFDPYKD
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgtagataacattaaagtctggggggagccgctggagaacgccgtaagtcag
gcggtgacttgctcgcaatatggagatgtattgggtgtggctctgatggccgaccatcac
aaaggttactcgcaacccatcggtggtgttgtcgcttataggaatatgatcagtccgtca
ggggtcggatatgatattgcctgtggtaacaaggctgtgcgtacagatctgatgtgggaa
gatattcgggatcagattgtaacgatcatggatgacatcaattcgaccatttctttcggc
gtgggtcgtaacaatccaacacccgtggatcatgagctgttcgacgacgcgagctggaag
ctttttgataccattgaaccgggattacaacataagctgaaaacacttgcacgtaaccaa
ctcggaaccgtaggcagtggcaatcatttcgtggatatttttgtagaagaggcaacggga
aaggtgtggattgcaaatcattttggcagccgcgggttcggtcataaagtggcgagtgga
ttccttaaccttgcggctggacgtcagttcagtggcaaagctcctggggaatcgatggat
caaccgcctacgttgtttgacctgaataccgaaatgggtgatatttattgggatggaatg
attctggcgggccgatacgcctatgcaggacgtgactatgttattgaacaggtgctcgga
attctgggggcaagtgctgaatatgccgttcataaccatcataactttgcctggaaagaa
caacacatgggtgaagaggtagttgtggtccgcaaaggtgcaacgccattggcacccggg
caactcggttttgtcggaggcagtatgggggatatctcggtaattgtggaagggatccac
agcgaggagaacaccgagtcattccgcagcaccgtacatggggcagggcgcacgatgagt
cgaacccaggcggctggcaaaatgaattacaagctgcgcacacgcatgggcggtgagatt
agcgaagcacagatgcatgaggcgattcgtgcctatggtgtcgaactgcggggagcgggc
acagacgaaagtccgtttgtgtacaagaaactgcaagacgtgctgaacgcacatgcgaat
acgttgaagatcaaccatgtgctgcgtcccgttggtgtcgccatggccggaggtaatgaa
ttcgatccgtataaggattag
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