Paenibacillus xylanexedens: BS614_14960
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Entry
BS614_14960 CDS
T04676
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pxl
Paenibacillus xylanexedens
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxl03032
]
BS614_14960
03400 DNA repair and recombination proteins [BR:
pxl03400
]
BS614_14960
Enzymes [BR:
pxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BS614_14960
DNA replication proteins [BR:
pxl03032
]
Prokaryotic type
DNA Topoisomerases
BS614_14960
DNA repair and recombination proteins [BR:
pxl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BS614_14960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Toprim_3
Toprim_2
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
APO45178
LinkDB
All DBs
Position
3348272..3350371
Genome browser
AA seq
699 aa
AA seq
DB search
MADALVIVESPSKAKTIGKYLGSKFIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDDTADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EIDDFEPEEYWSITAKLTADGNPFEAKFHKLNGAKTELGSEAEVQAILKQIEGADFTIKE
VKEKERSRNPSAPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKEYIVGKYGEPFAPETPRNYSKKAANAQDAHEAIRPTSILRDPDSI
KSFMSRDQFRLYKLVWERFVASQMSSAILDTLSVDIAAGDTIFRAAGSKVRFQGFMKVYV
EGNDDGTTDEDRLLPPLKSGDVLEKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLAEFYESFEKRLEFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCKEGHVVERRSKKGRIFYGCDKYPECDFVSWDRPSAKP
CPSCGSLMIEKRNKKGARLQCTSCDHQEPVDEPDDESAD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcactcgtaatcgtggagtcgccctcaaaggcgaagacgataggcaaatat
ttaggcagcaagttcatcgtaaaagcttcgatggggcatattcgcgatttgccaaagagt
cagatcggcgttgaggtagagaatgattttaatccgaaatatattacgatccgcggcaaa
ggttcaattttgaaagaactgaaggatgcacggaagaaagtgaaaaaagtgtatctcgca
gctgacccggatcgcgaaggtgaggctatcgcatggcatttggcccatgcccttgaactg
gacgatacggcagattgccgggttgtatttaatgaaattacaaaacaggcggtcaaagat
gcgttcaaaacgccgcggaaaatcaatatggatttggttaacgcgcaacaggcaagacgt
attctggatcggctcgttggatataaaattagtccgttattatggaagaaagtaaaaaaa
ggattgtctgcaggccgggttcagtccgtggctgttaaaatcattttagatcgtgaaaat
gaaattgatgattttgagccggaagaatactggagcattactgccaaactgacagcagac
ggcaatccgtttgaagccaagtttcataaactgaacggggccaaaacagagctgggcagt
gaagcggaagtgcaagcgatcctgaaacagatcgaaggtgcagactttacgatcaaggaa
gttaaagagaaagaacggagccgtaacccttccgccccgtttacaacgagttctctgcaa
caggaagcggcgcgtaaattgaatttcagagcttccaagacgatgtcagtcgcccaacaa
ctatatgaaggtgtagaccttggaaaagaaggcacagtaggtctcatcacgtatatgcgt
actgactccacacgaattgcggcatctgcacaagaagaagccaaagaatatatcgttggt
aagtatggtgagccatttgcacctgagactccacgaaactattccaaaaaagcagctaat
gctcaggatgcgcatgaagcgattcgtccaacttcaattctgcgtgaccctgactcaatc
aagtcgtttatgagtcgtgatcagttccggttgtataaactggtatgggaacgttttgta
gcgagccaaatgtcttcggctattctggatacactctctgtagatattgctgcgggggac
accattttccgtgcagcaggttcgaaggtacgattccaaggtttcatgaaggtatatgtt
gaaggaaacgacgatggtacaaccgatgaagatcgtctgctgcctccgttgaaaagtgga
gatgtgcttgagaagcaggagattgagccaaaacagcattttacacaacctcccccccgt
tatacggaggcaaggttggttaagacgcttgaggaattgggtatagggcgtccgagtaca
tatgcgccaacactggagaccattcagaagcgcggatatgttgcaattgaggaaaagaaa
ttcatgccgaccgagctgggtgaactggtcatcgaacagatggaagagtttttccctgaa
atcctgaatgtagagtttaccgcgaacatggaaggtgatcttgaccatgtggaggaaggt
tccgaggattgggtcaaagtactcgcagaattctatgaatcttttgagaaacgccttgag
tttgcggaagaagaaatgaaagaaatcgagattgaagacgaagtatcggatgagatctgt
gagaagtgcggcaaaccgctggtttataaactcggacgttttggcaagtttcttgcgtgc
tctggcttccctgattgccggaataccaaaccgattatcaaggatatcggcgtgacttgt
ccgaagtgtaaggaaggtcatgttgttgagcgtcgtagcaaaaaaggacgtattttctac
ggttgtgacaaatatcctgaatgtgattttgtctcatgggacagaccttcagccaaacca
tgtccaagttgcggatcgctaatgattgaaaagcggaacaaaaagggagcacgattgcag
tgtacttcatgtgatcatcaggagccggtggatgaaccggatgacgaatcagcggattaa
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