KEGG   Paenibacillus xylanexedens: BS614_15140
Entry
BS614_15140       CDS       T04676                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
pxl  Paenibacillus xylanexedens
Pathway
pxl02020  Two-component system
pxl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pxl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BS614_15140
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    BS614_15140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pxl03021]
    BS614_15140
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:pxl02035]
    BS614_15140
Transcription machinery [BR:pxl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BS614_15140
Bacterial motility proteins [BR:pxl02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    BS614_15140
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 UPF0122 HTH_38 PhyR_sigma-like Sigma70_ECF HTH_23 PCI 7TMR-HDED
Other DBs
NCBI-ProteinID: APO45214
UniProt: A0ABS4RP99
LinkDB
Position
3382617..3383405
AA seq 262 aa
MNERKASHLNHSDLWEKWKEHGDLEAKKTLIEKYLHIVNYVSGRLAVGLPKNVPKDDLES
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKRIEDAYQQ
LEQSYLRSVSDEEMSEYLDVSTKDFQHMLQEVAVMSLCSLEDPIREEESETRLSLMVDEK
AKNPDYKVNEFYLKEALVQGLDKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLDKQKDLLMRKD
NT seq 789 nt   +upstreamnt  +downstreamnt
ttgaacgagcgtaaagcttcacatttgaaccattctgatctgtgggaaaagtggaaagaa
catggagatcttgaagccaagaaaactttgattgaaaagtatcttcatattgtaaattat
gtatccggtcgactggctgttggtttacccaaaaatgttcccaaggatgacttggagagc
aatggcgttatgggattaattgatgcattggagaagttcgactatgaacgtggtctgcaa
tttgaaacttatgcatcatggagggtccgcggagccattcttgacggtctgcgtcaaggt
gattgggttccgcgttctgtgcgtgagaaggccaagcgaattgaagacgcctaccaacag
ctggaacaaagttatctcaggtctgttagtgatgaggaaatgagcgagtacttggacgta
tccactaaagattttcaacatatgcttcaggaagtggcagtcatgtcactttgctcgctg
gaggacccaattcgtgaggaagagtcggagactcgtctgtctttgatggtggatgagaaa
gccaaaaatccggattataaagtgaatgagttttatttgaaggaagctttggtgcaaggg
cttgacaagttgacggtaaaagagagaacggttgtttcactcttgtattacgaggatctt
tctcttagtgaaattgctgaggttatgtctctttctccgtctcgtatatcccagttacat
tccaaggcaatattacgattacgcggcacgttggacaaacagaaagatttgttgatgcgt
aaagattaa

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