Paenibacillus xylanexedens: BS614_15140
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Entry
BS614_15140 CDS
T04676
Name
(GenBank) RNA polymerase subunit sigma
KO
K02405
RNA polymerase sigma factor FliA
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl02020
Two-component system
pxl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BS614_15140
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BS614_15140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxl03021
]
BS614_15140
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pxl02035
]
BS614_15140
Transcription machinery [BR:
pxl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BS614_15140
Bacterial motility proteins [BR:
pxl02035
]
Flagellar system
Flagellar assembly proteins
Stator
BS614_15140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
PhyR_sigma-like
Sigma70_ECF
HTH_23
PCI
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
APO45214
UniProt:
A0ABS4RP99
LinkDB
All DBs
Position
3382617..3383405
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AA seq
262 aa
AA seq
DB search
MNERKASHLNHSDLWEKWKEHGDLEAKKTLIEKYLHIVNYVSGRLAVGLPKNVPKDDLES
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKRIEDAYQQ
LEQSYLRSVSDEEMSEYLDVSTKDFQHMLQEVAVMSLCSLEDPIREEESETRLSLMVDEK
AKNPDYKVNEFYLKEALVQGLDKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLDKQKDLLMRKD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcgtaaagcttcacatttgaaccattctgatctgtgggaaaagtggaaagaa
catggagatcttgaagccaagaaaactttgattgaaaagtatcttcatattgtaaattat
gtatccggtcgactggctgttggtttacccaaaaatgttcccaaggatgacttggagagc
aatggcgttatgggattaattgatgcattggagaagttcgactatgaacgtggtctgcaa
tttgaaacttatgcatcatggagggtccgcggagccattcttgacggtctgcgtcaaggt
gattgggttccgcgttctgtgcgtgagaaggccaagcgaattgaagacgcctaccaacag
ctggaacaaagttatctcaggtctgttagtgatgaggaaatgagcgagtacttggacgta
tccactaaagattttcaacatatgcttcaggaagtggcagtcatgtcactttgctcgctg
gaggacccaattcgtgaggaagagtcggagactcgtctgtctttgatggtggatgagaaa
gccaaaaatccggattataaagtgaatgagttttatttgaaggaagctttggtgcaaggg
cttgacaagttgacggtaaaagagagaacggttgtttcactcttgtattacgaggatctt
tctcttagtgaaattgctgaggttatgtctctttctccgtctcgtatatcccagttacat
tccaaggcaatattacgattacgcggcacgttggacaaacagaaagatttgttgatgcgt
aaagattaa
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