Paenibacillus xylanexedens: BS614_15385
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Entry
BS614_15385 CDS
T04676
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS614_15385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxl03019
]
BS614_15385
Messenger RNA biogenesis [BR:
pxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BS614_15385
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
APO45260
UniProt:
A0A1L5LPE0
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Position
3437637..3439178
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AA seq
513 aa
AA seq
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MEIAITIALVVAALIIGFGVGYFIRKSLAEAKISSAEQAAVQIVENAKKEAEALKKETVL
EAKDEIHRIRAEAEKDTRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVANKEKRID
ETQQQIEMIYKNQVTELERISNLTMEDARSIILSNVEQEVRHETAQMIKDIEQQAKEEAD
KKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLIID
DTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQAT
FEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLAGLMAGELGEDVTLARRAGLL
HDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALS
AARPGARRETLETYIKRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFRL
ARDITKMIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgcaatcacgatcgctctcgttgtggccgcgctaatcattgggttcggagta
gggtattttattcgcaaatctcttgcagaggctaaaatctctagtgcggaacaagctgcc
gtacaaatcgtggagaacgcgaagaaagaggcagaagcactgaagaaagaaacggtgctg
gaagcgaaggatgaaatccatcgcattcgtgctgaagctgaaaaagacactcgtgaacgt
cggaatgaaattcaacgacaagaaagacgattgttgcaaaaagaagagtcgctggataaa
aaattggaatcactcgaacgtaaagaagagcaagtggctaacaaagagaaacgaattgat
gagactcagcagcagatcgaaatgatttacaaaaaccaggtgacagagttggaacgtata
tccaacctcactatggaagacgcacgcagtatcatactgtccaacgtagaacaggaagtt
cgtcatgagacggctcaaatgatcaaggacattgaacaacaagcgaaggaagaagcggac
aaaaagtcccgcgagattattacactcgccatccaacgctgtgcggctgaccacgtagcg
gaaacaacggtatctgttgttaccctgccaaatgaagaaatgaaaggccggattatcggt
cgtgaaggacgtaacatccgtgcgcttgaaacccttacagggattgacctcattatcgat
gatacgccagaagctgttattctgtcgggctttgatccgattcgccgtgaaatcgcccgt
actgccctggagaaactggtggctgatggacgtattcacccggcacggattgaagagatg
gttgagaaatcccgcaaagaagtggatgagcgcatccgtgaatacggtgagcaagctacc
tttgaagtgggcgtgcatggtctgcatccggatctgattaaaattttgggccggttgaag
ttccgtacaagttacggtcaaaacgtcttgaaacattccatggaagtcgcttatctggct
ggactgatggctggcgaactcggagaagacgtaactctggcaagacgtgcaggtctattg
catgacatcggtaaagcgctggatcacgaagtggaaggatcacacgtcgaaattggcgtg
gaactggcgaagaaatacaaagaacatccggttgtaatcaacagtatcgcgtcccatcac
ggagattgcgaagcgacttcggtcattgccatgttggttggcgcagcagatgcgctctcc
gcagcaagaccaggcgcacgccgcgaaacgctggaaacgtatatcaaacgactggagaag
ctggaagaaatctcagagtccttcgaaggtgtcgagaaatcgtacgccattcaggccgga
cgcgaagttcgcgttatggtacagcctgagaagatcgatgatgctgaagccttccgctta
gcccgtgacatcacgaagatgattgagaatgaactcgactatccgggtcacatcaaagtc
accgtcatccgggaaacccgtgcggttgaatacgcaaaatag
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