Paenibacillus xylanexedens: BS614_17985
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Entry
BS614_17985 CDS
T04676
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS614_17985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxl03019
]
BS614_17985
Enzymes [BR:
pxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS614_17985
Messenger RNA biogenesis [BR:
pxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS614_17985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
UTP25_NTPase-like
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APO45721
LinkDB
All DBs
Position
4048346..4049752
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AA seq
468 aa
AA seq
DB search
MTFKDLNIIPSIMEGLSKANYTNPTPIQEQAIPAVLAGRDLLGCAQTGTGKTAAFSVPII
QLLSERSKGQGSKSARHIRSLILTPTRELAIQIADNIKVYSRYTDIRCTAIVGGVSQKVQ
ERALNQGADIIIATPGRLNDLINQKRIDLKMVEILVLDEADRMLDMGFIHDVKRIIAKMP
NKKQTLFFSATMPPEITKMVKTLLVDPVKVEITPVSSTVDRIEQSIYLLENGKKQHMLNQ
ILEDKSIVTALVFTRTKRGADRVTRDLAKANVTAQAIHGNKSQNERQRALNNFKSGATRV
LVATDIAARGIDVEELSHVINFNLPNIPETYVHRIGRTGRAGKSGMAISFCEKDELPFLK
DIEKVIKKTIPEVKGHPYPMTGVPVFEKTSKASGSKPSFNKSAAGKPAKSKANPARKPKS
EWFAKSGKSNSSRSNDGRPNSSRSNSSSSKSNHGSFSRSSKTRNDRAN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaggacttaaatattatcccctctattatggaagggttaagcaaagcaaac
tatactaatcctacccctatacaggaacaggccattccagctgtattagctggcagagac
ctgctgggatgtgcacagacaggaacaggcaagacggcagcattttcggtgccgatcatt
caattattaagcgaaagatccaaagggcaaggatcgaagtccgcacgacatattcgctca
ttaattttgacaccaacacgagaattggctattcagatcgcggataacatcaaggtatat
agccggtatacggacattcgttgtacggcaatcgttggcggcgtttcgcaaaaagtgcaa
gagcgtgcgctgaatcaaggtgcagatattattatcgcgacacctggtagattgaacgat
ctgattaaccagaaacgtattgatctgaagatggttgagattcttgttctggatgaagca
gaccggatgttagacatgggcttcattcatgacgtgaaaagaatcattgccaaaatgccg
aacaaaaagcagacgctgttcttctcagctacgatgcctcctgaaatcaccaaaatggtt
aaaaccctgctggttgatccagtcaaagtagaaatcacaccggtatcttcaacggtagac
cgcattgaacaatctatatatttgctggagaacggcaagaagcaacatatgttaaaccaa
attttggaggataaatccatcgtcacggcattggtgttcacacgcacgaagcgcggcgct
gaccgggttacacgtgatttggccaaagcgaatgttacggcacaggctattcatggcaac
aagtctcagaacgagagacaacgggcactgaacaacttcaagagtggtgcaacacgtgta
ttagttgcgacggacatcgcggcaagaggaattgacgtagaggaactttcacatgtcatt
aactttaacctgcctaacattccggaaacgtatgttcaccgtattggacgtacagggcga
gctggcaaaagcgggatggccatatcgttctgcgagaaggatgaacttccattcctgaag
gatatcgagaaagtaatcaaaaagacgattcctgaagtgaaaggtcatccgtatccaatg
acaggtgtacctgtgtttgaaaaaaccagcaaagcatcaggcagtaaaccttcgttcaac
aaatcggctgcaggcaaaccggcgaagtccaaagctaacccggcacgcaagcccaaatcc
gaatggtttgccaagagtggtaaatcaaacagtagtcgttcaaacgacggtagacccaat
agcagtagatcaaacagcagtagcagtaaatctaaccatggctcattcagccgcagcagc
aaaactaggaatgatagagccaattaa
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