Paenibacillus xylanexedens: BS614_24690
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Entry
BS614_24690 CDS
T04676
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BS614_24690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxl03021
]
BS614_24690
Transcription machinery [BR:
pxl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BS614_24690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
Motif
Other DBs
NCBI-ProteinID:
APO46924
UniProt:
A0ABS4RKX0
LinkDB
All DBs
Position
complement(5635254..5636393)
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AA seq
379 aa
AA seq
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MANDQHTELETELTLDQVKDQLIESGKKRASLNYKEIIEKLSPFEQDAEQMDEFYEQLSD
LGIDVVNENNEEVTLRPSEDSENNTREGEDEFHFDDDLSLPPGIKINDPVRMYLKEIGRV
PLLSADDEVQLAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLI
KAVEKFDHKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE
LGREPTPEEIAAEMDLSVEKVREITKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPAD
AAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKRLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagaaacagaattgacactggatcaggttaaagat
caattgattgaatcaggtaaaaaaagagcttcgctgaattacaaggaaattatagagaaa
ctctctccttttgagcaggatgcagagcaaatggatgagttctatgagcaactgagcgat
ctgggtatcgatgtagtgaatgaaaacaatgaagaggttacacttcgtcctagtgaagat
tccgagaacaacaccagagagggagaggacgaattccactttgatgatgatctgagcttg
ccgccaggtatcaaaatcaatgaccctgtccgtatgtacctcaaggaaattggtcgtgtg
ccactgttgtccgcagatgatgaagtacaactggctaaacggattgagaacggggatgaa
gaagccaagcgtcgtctggctgaagctaacttacggctcgttgtcagtatcgccaagcgt
tacgttggacgtggaatgttgttccttgatttgattcaggaaggtaatatgggtctgatc
aaagcggttgagaagttcgaccacaaaaaaggatacaagttcagtacgtatgctacatgg
tggatccgccaagcgatcactcgtgctattgctgaccaggcgcgtaccattcgtatccct
gtgcacatggtggagacgattaataagctgatccgggtatcccgtcagctgttgcaggaa
cttgggcgtgaaccgacaccagaagaaatcgctgctgagatggatctgagtgtagagaaa
gttcgtgaaattacgaagattgcacaggaaccggtttctctggaaacaccgattggtgag
gaagatgattcccatctgggtgacttcattgaggatcaggaagcacttgctccggcagat
gctgctgcgtatgagttgctgaaagaacagctcgaagatgtattggatacattgactgaa
cgtgaagagaacgtgcttcgtctacgttttggtctggacgatggacggacgagaacgctg
gaggaagtcggcaaggtatttggtgttacgcgtgagcgtattcgtcagatcgaagccaag
gctcttcgtaagttgcgtcacccgagtcgtagtaaacgactcaaggatttcctcgaataa
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