Paenibacillus xylanexedens: BS614_30310
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Entry
BS614_30310 CDS
T04676
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pxl
Paenibacillus xylanexedens
Pathway
pxl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pxl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BS614_30310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxl03021
]
BS614_30310
03400 DNA repair and recombination proteins [BR:
pxl03400
]
BS614_30310
Enzymes [BR:
pxl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BS614_30310
Transcription machinery [BR:
pxl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BS614_30310
DNA repair and recombination proteins [BR:
pxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BS614_30310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
APO47882
LinkDB
All DBs
Position
complement(6938541..6942155)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFHAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTSFTEEQQEGMLLTTVGKIIFNEIFPASFPYINDATRANLYQGTADHSFVYEKG
ADLREAIMNAPLAGGVGKEYLGSIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGITVA
VSDVIVPPEKFEILRQSEEKAQIVTNQYRRGLITNEERYDRIIDIWSKSKDDITEILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRDDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETLRHPETKEIIVGRNELIDSDKAEAIIKAGITKLQIRSVLSCRASHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEIQGEAESKVYAVTYGSRVRVSEGAEVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDMHEYERANKIAILSDKEPAVAKPILLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMHRYRSIKFAEPEDGQSSVEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgaatacatgaagatcgggcttgcttccccagagaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaacgatcaactatcgtacgttgaaa
ccggaaaaagaagggctgttctgcgaaaagatttttggccctacaaaagactgggaatgt
cattgcggcaaatacaaacgcgtccgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagtaacacgtgcaaaagtacgccgcgaacggatgggccatattgagctcgctgctccg
gtatcgcatatctggtacttcaaaggtattccgagccgtatgggtcttgctctggatatg
tcaccaagatctcttgaagagattatttattttgcatcatatgttgtaactgatccagga
gaaactccactggagaaaaaacagctgttgtccgagaaagaataccgcagctaccgtgaa
aaatacggctatggtttccatgctggtatgggcgcagaagcggttaaaaaattgcttcaa
gatcttgatatagacaaagagctcgagttcctgaaagaagagctccggactgcgcaagga
caacgtcgtaatcgtgcaatcaaacgtctggaagttatcgaagcattccgcaactccggc
aacaagccagagtggatgatcatggatgtacttcctgttatcccgccggaacttcgtcca
atggtacagttggatggtggacgttttgcaacgtctgacctgaatgacttgtaccgccgt
gtaatcaaccggaacaaccgtctgaaacgtctgcttgatctgggcgcgccagatattatc
gtgcaaaatgaaaaacggatgttgcaggaagctgttgacgcattgatcgataatggtcgt
cgtggacgcccggtaacgggtcctggtaaccgtccattgaaatctctcagccacatgctg
aaaggtaaacaaggacgtttccgtcaaaacttgctcggtaaacgggttgactattctggt
cgttccgttatcgttgttggaccttacctgaaaatgtatcagtgtggtctgccaaaagat
atggcacttgaattgttcaagccttttgttatgaaagagcttgtaaataaagggcttgcc
cacaacatcaagagcgcgaaacgtaaagttgagcgtgtaagtcctgaagtatgggatgtt
cttgaagaagtaatcaaggagcatccggttctgttgaaccgtgcccctacgcttcacaga
ctcggtattcaagcatttgaaccgattctcgttgaaggtaaagcaattcgtcttcacccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccaaatggccgtgcacgttccc
ttgtccgctgaagctcaagcggaagcacgtatcctgatgcttgcatctggtaacattttg
aacccgaaagacggtaaaccggttgttactccttcccaggatatggtgcttggttcttac
tacctcactatggataacaaggaagaaaagggcacaggtatgatcttgcgtacagttaac
gaagctgtatcggcatatcaacgtggtactgctgggctgcatgcgcgtgtagctattcct
gttaaggcgcttggtaaaacaagcttcacggaagaacaacaagaaggaatgttgctgaca
actgtcggtaaaattatcttcaatgaaattttcccggcaagcttcccgtatatcaatgac
gcgactcgtgctaacctgtaccaaggtactgcagatcactcatttgtatatgaaaaaggt
gctgatctcagagaagctattatgaatgctcctctggctggcggtgtcggtaaagaatac
ctcggctccatcattgcacgttgttttgaaatttatcacacaacggaaacagccgttatt
ttggataaaatcaaacaacttggattcacatactctacacgtgccggtattacggttgcg
gtatctgatgttatcgttccgcctgagaagtttgaaattcttagacaatctgaggaaaaa
gcacaaatcgttacgaatcagtaccgtcgtggtctgattacgaatgaagagcgctatgac
cgtatcattgatatctggtcaaaatccaaagatgacatcactgagattctgatgaagtcc
atggatcgttacaactcgatcatgatgatggtagactccaaagcacggggtaacaaatcg
caaattacccaattgggcggtatgcgtggtctgatggccaacccatccggtcgaattatc
gaactcccaatcaaatcgaacttccgtgaaggtctgacggtactcgagtactttatctcc
actcacggagcgcgtaaaggtttggcggatacagccctgcggacagccgattcaggttac
ctgactcgtcgtctcgtagacgtagcccaagacgtaatcgtgcgtgatgatgattgtggt
acagataaaggctttacggtaagtcgtatccaggatggtaaagaggttatcgaagatctc
tacgaccgtattgaaggcagatactgtttcgagactcttcgtcatccggaaacgaaagaa
atcattgtaggtcgcaatgaattgattgactccgataaagcagaagcgatcatcaaagca
ggtattactaaattgcaaatccgctccgtcctcagctgccgtgcaagtcatggtgtctgc
aagaagtgttatggtcgcaacctcgcgactggtaaacacgtggagattggtgaagcagtt
ggtattatcgcagcacagtccattggtgagccaggaacacagcttacaatgcgtacgttc
cataccggtggtgtagccggagacgatattacgcaaggtttgccacgtatccaggagttg
ttcgaagctcgtaatcctaagggtcaagcaacgatcagtgaaatcgatggtgtggttaaa
gagattcgcgaagcgaaagatcgtcgtgaaatcgaaattcaaggtgaagcggaatccaaa
gtatacgccgttacctacggttcccgtgtgcgcgtaagcgaaggcgcggaagttgaagcg
ggtgacgagttgacagacggttccattgatccaaaagaaatgttacgaattaaaggcata
cgtggtgtacaaaactacattctgcaggaagtacaacgcgtatatcgtaaccaaggcgta
gaaattaacgataagcacgttgaagttatgatccgtcaaatgctgcgtaaaatccgtatc
gtagatgcaggagatacaacgctgttgccaggatcgttcgtggatatgcatgagtacgaa
agagctaacaaaattgcgattcttagtgataaagagccggcggttgctaaaccaatcctg
ctcggtattacgaaagcatccctggaaacagactccttcctctcggcggcttcgttccaa
gaaactacacgtgtattgacagatgcagcgatcaagggtaaagtcgatcagttgctcggt
ctgaaggagaatgtaatcatcggtaaattgattcctgcaggtacaggtatgcaccgttac
cgcagcatcaaatttgctgagccagaagatggccaatcttcagtagaagaacttgagcca
gtttcggttgattaa
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integrated database retrieval system
