Pseudomonas xantholysinigenes: HU772_006200
Help
Entry
HU772_006200 CDS
T07643
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pxn
Pseudomonas xantholysinigenes
Brite
KEGG Orthology (KO) [BR:
pxn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pxn03009
]
HU772_006200 (rlmD)
Enzymes [BR:
pxn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HU772_006200 (rlmD)
Ribosome biogenesis [BR:
pxn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HU772_006200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
MTS
Cons_hypoth95
Methyltransf_11
RrnaAD
Met_10
Methyltransf_23
Methyltr_RsmB-F
PCMT
Methyltransf_15
TPMT
Ubie_methyltran
DREV
PrmA
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QXI39674
UniProt:
A0A9E6PYW3
LinkDB
All DBs
Position
1353562..1354920
Genome browser
AA seq
452 aa
AA seq
DB search
MSRKKSNSGLRFQPAGGNRAPQVPVGKKQRLLIERVSGDGRGIAFVEGRTWFVSGALVGE
EVEARVLAARGKVVEARLERVFLPSPQRREAPCRHYARCGGCNLQHVPHADQLALKQRLL
AEQLQRVAGLQPEQWAAPLSGPEFGYRRRARVAVRWDAKARQLDVGFRAEASQDIVAIDD
CPVLVQPLQNIFRHLPTVLRSLSKPQALGHVELFSGTAEALLVRHVAALPAEDLARLEAF
CAEAGAQLWLQGEGQPAPVDAAAQLGFALEPWGLELAWRPGDFVQVNAQVNTLMIQQALA
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAEANARNNNVHNARFFQ
ADLSQPLAGAGWVAEGFSAVLLDPPRDGAFEVVQGIARLGARRLVYVSCNPATLARDAQV
LAGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaagaaaagcaacagcggcctgcgcttccagccggccggcggcaaccgtgcc
ccacaggtccccgtgggcaagaaacagcgcctgctgatcgagcgcgtgtccggcgatggc
cggggcattgcctttgtcgaagggcgcacctggttcgtcagtggcgcgttggtcggcgaa
gaggtcgaggcgcgcgtgctggcggcgcgtggcaaggtggtcgaggcgcgcctggagcgc
gtgttcctgcccagcccgcagcggcgcgaggcaccctgccggcattacgcccgctgcggc
ggctgcaacctgcagcatgtgccccatgccgaccagttggccctcaagcagcgcctgctg
gccgagcagttgcagcgggttgccgggttgcaacccgagcaatgggccgcgcccctgagc
gggccggagttcggttaccggcgccgggcgcgggtcgccgtgcgttgggatgccaaggcg
cgccagctggacgtgggttttcgcgccgaggccagccaggacatcgtcgccatcgacgac
tgcccggtgctggtacaacccttgcagaatattttccgccatttgcccaccgtactgcgc
agcttgagcaagccgcaggcgctggggcatgtggagctgttcagcggcaccgccgaagcg
ctgctggtgcgtcatgtggcagcgttgcctgctgaagacctggcgcgcctcgaggcattc
tgcgccgaagccggcgcccagttgtggctgcagggcgaaggccagccggcaccggtggac
gccgcggcgcaactgggctttgccctcgagccctgggggctggagctggcctggcgaccc
ggggacttcgtccaggtcaacgcccaggtcaacaccttgatgatccagcaggccctggcc
tggctggcgccgcaggccgatgagcgggtgctggacttgttctgtggcctgggcaacttt
gccttgcccctggcgcgccaggcgcgcgaggtggtggcggtggagggcgtgcaggccatg
gtcgagcgcgccgaagccaatgcccggaacaacaatgtgcataacgcacggttttttcag
gccgatttatcgcagcctttggcgggcgccggatgggtcgccgagggcttttctgcggta
ctcttggacccaccgcgcgacggcgccttcgaggtggtgcaaggcatcgcccggttgggc
gcccggcggctggtctatgtatcgtgcaacccggccacgctggcgcgagacgcccaggtg
ctggcggggcaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcacatgtcgaggccatggcgttattcgaagcgggctga
DBGET
integrated database retrieval system
