Pseudomonas xantholysinigenes: HU772_007305
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Entry
HU772_007305 CDS
T07643
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pxn
Pseudomonas xantholysinigenes
Pathway
pxn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU772_007305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxn03019
]
HU772_007305
03009 Ribosome biogenesis [BR:
pxn03009
]
HU772_007305
Enzymes [BR:
pxn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU772_007305
Messenger RNA biogenesis [BR:
pxn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU772_007305
Ribosome biogenesis [BR:
pxn03009
]
Prokaryotic type
rRNA helicases
HU772_007305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QXI39887
UniProt:
A0A9E6PYL1
LinkDB
All DBs
Position
1601525..1603201
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AA seq
558 aa
AA seq
DB search
MTQETGGFAALELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFKAIPES
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTNSLAPLVAESEASHGELFDRLTADLGCTPRAL
AAALLRKATNGQALDLATVEREQPLVPTYTPRERGERTERGERPERGDRERRAPMPLAEG
RVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLSKL
KDTRVAGKQLKLRRYRED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgaactcaatccgaacatcgttgctgcc
gtcctggccaccggctatgaagagccgtcggccatccagcaacagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcag
atgccaggcgttaacgtggtggccgtgtacggtggtgccccgatgggcccacagctgcgt
gccattcgcaatggcgcccagatcgttgtcgccaccccgggccgcctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtccaccgttcagtacctggtactcgacgaagcggacgaa
atgctcaagctcggcttcatggacgacctggaagtgatcttcaaggccatccccgagtcg
cgccagaccgtgctgttctccgccaccctgccgtcgtcgatccgttcgatcgccgagcgt
cacctgcgcgagcccaagcacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaccaggcccacctgatggtccacgccgaccagaagatcccggccgtgctgcgcctgctg
gaggtcgaggagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgccctggaagccaagggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgagtgatcgactcgctcaaggatggtcgcctggacatcgtcgtc
gccaccgacgtcgccgcccgtggcctggacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgatccggagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcactgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgcgttaccgggcagaaggtcgccgaggcccgcctgccgaacgcccaggccgtgctc
gatgcacgcatcaagaagctgaccaacagcctggcgccgctggtggccgagtccgaggcc
agccacggtgagctgttcgaccgcctgaccgccgacctgggctgcaccccgcgtgccctg
gccgcggccctgctgcgcaaggccaccaacggccaggcgctggacctggcgaccgtcgag
cgcgagcagccgctggtgccgacctacaccccgcgtgagcgtggtgagcgtaccgaacgc
ggtgagcgccctgagcgtggtgatcgcgagcgtcgtgcgccaatgccgctggccgaaggc
cgcgtgcgttgccgtaccgccctgggtgcccgtgatggtatcgctgccaagaacctgctg
ggcgcgatcctcaacgagggtggtctggcgcgtgatgccatcggtcgtatccaggtgcgt
gacagcttcagtctgatcgagctgccggaagacggcctcgagcgtctgctgtccaagctc
aaggacacccgcgtggccggcaagcagctgaagctgcgtcgctaccgcgaggactga
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