Pseudoalteromonas sp. Xi13: EJ103_02580
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Entry
EJ103_02580 CDS
T10490
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pxsi Pseudoalteromonas sp. Xi13
Brite
Transcription machinery [BR:
pxsi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EJ103_02580 (rapA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AZN31670
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Position
1:complement(581401..584295)
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AA seq
964 aa
AA seq
DB search
MNFSLGQRWISDTESDLGLGTVVAIEGRQVSILFPASGENRVYSSAEAPVTRVAFNPGDV
IKSVEEWELEVESIEVQGELLCYVGTRVDTGEEAKLKETFLDHFIKFNKPQDRLFAGQVD
RFDRYTLRYQTWQHQFERQQSPIKGLIGQRANLIPHQLYIAQEVGKRFAPRVLLSDEVGL
GKTIEAGMILHQQIISGRASRVLIVVPENLQHQWLVEMLRRFNLRFSIFDEERCDEAFAD
SPNVFDTEQLVLTSLEFLTKKKRWFEQATLADWDLLVVDEAHHLSINNGKPSTEYQRMAE
LSQDIPGLILLTATPDQLGHRSHFARLQLLDPDRFYDYDVFKEEEANYKDVAEAANQLLQ
AQALDDTAKATLIELLKETDITDVLEKAQQGDLPARKEILNMLLDRHGTGRILFRNSRSG
IDGYPSRKLHAYPMALPKQYKTAMSVLGSMSGIQSAELSAQRALFPEKIFQEFEGESASW
GAFDPRVDWLIETLKTLKHEKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERD
RAAAFFADEYDNAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTK
DVNIHVPYFENTAQEVLLRWYNEGLDAFESTSTTGQLLYKEFSEDLLDYIAAHNCDEEEL
DPLLEQVAKQNAVLRKQMESGRDRLLELHSSGQGAADSLVEEIEALDNQFELPSYMINVF
DTFGVSQEDKGENTIILKPTEHMLSASFPSLKEDGMTVTFDRDTALSQEDVHFISWDHPM
VQGTMDMICDDDFGSASVALLKNKKLPPGTFFVELIFVAEAMAPKALQVGRFLPPTPIRI
LLDKASNNLGENVAFDSFNQQLSAVGRQTASKLAGALQGAVHPMINTAKEMAQQQLEVIR
SASLEKMQSTLGEEQARLEALKQINPNIRQEEITFFDKQRSELATHIEKAQLKLDAIRLI
VVSH
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccttaggtcagcgttggatcagtgatacagagtcagatttaggattaggc
accgtagttgccattgaaggccgccaggtcagcattttatttcctgccagtggtgaaaac
cgtgtttattctagtgcagaagcaccggttacccgtgtggcatttaatccaggcgatgtg
atcaaaagcgttgaagaatgggaattagaagtagagtctattgaagtgcaaggtgaacta
ctttgctacgtaggtactcgcgttgataccggcgaagaagcaaagctaaaagaaaccttt
ttagatcattttattaagtttaataaaccgcaagatcgtttatttgcaggccaagtagat
cgctttgatcgctacaccttacgttaccaaacatggcaacaccaatttgagcgccagcaa
tcgcctattaaaggcttaattggccagcgcgctaaccttattccgcatcagctttatatt
gcacaagaagtaggtaaacgttttgccccacgggtactgctctcagatgaagtaggcctt
ggtaaaaccattgaagccggcatgatattacatcaacaaatcattagtggccgtgctagc
cgtgtacttattgtggtgccagaaaacctgcagcaccaatggttagtagaaatgctacga
cgctttaatttacgtttttctatttttgatgaagagcgctgcgacgaagcctttgcagac
tcgccaaacgtatttgataccgagcagctagtgcttaccagccttgagtttttaaccaag
aaaaaacgctggtttgaacaagcaacacttgctgattgggatttattagttgttgatgaa
gcgcaccacctaagcattaacaatggtaagccgagcaccgaatatcaacgcatggctgag
cttagccaagatattccgggccttattctattaacagcaacgcctgatcaacttggtcac
cgtagccactttgcccgcttacaattgctcgacccagatagattttacgactacgacgta
ttcaaagaagaagaagctaattacaaagacgttgccgaagcggcaaatcagctactgcaa
gcacaagcccttgatgatacagccaaagccacactcattgagttattaaaagaaaccgat
attactgatgtgcttgaaaaagctcagcaaggtgatttacctgcccgtaaagaaatactt
aacatgctgcttgatcgccacggtacaggtcgtattttgtttagaaacagtcgcagcgga
attgatggctaccctagccgtaaattacatgcttacccaatggcactgccaaagcaatat
aaaacagcaatgtcagtacttggcagcatgagcggtatacaaagtgcagagctaagcgca
caacgcgctctgtttccagaaaaaatctttcaagagtttgaaggtgaaagtgccagctgg
ggcgcatttgatccacgtgtagattggttaatcgaaacacttaaaaccctaaagcacgaa
aaagtactgcttatttgtgccaaagccgaaaccgctattagccttgagcaaattttgcgt
gagcgtgaagcaataaaagcatctgtgttccacgagggcatgtcgattatagagcgcgac
cgcgcagcagccttttttgccgatgaatacgacaatgcacaaatactgttgtgttcagag
attggctcagaaggacgtaacttccagttctcgcatcacttagtgttatttgatttacca
ctaaaccctgacttacttgaacaacgtatcggccgattagaccgtattgggcaaacaaaa
gatgttaatattcatgtgccgtattttgaaaatacagcgcaagaagtattactgcgctgg
tacaacgaaggccttgatgcatttgaaagcacatcaaccactggccagctattgtataaa
gaatttagtgaagacctacttgattacattgctgcccataattgtgatgaagaagagctc
gaccctctacttgagcaagtagccaagcaaaatgccgtgctacgcaaacaaatggaaagt
ggccgtgaccgtttattagagctgcattcatctggccaaggcgctgccgattcattggtt
gaagaaattgaagcacttgataaccaatttgagttaccaagttacatgatcaacgtattc
gacacgtttggagtaagccaagaagacaaaggcgaaaacaccattattttaaagccaaca
gagcatatgctaagtgcatcgttccctagcttaaaagaagatggcatgacggttacattt
gaccgcgataccgccctttctcaagaagacgtacattttattagctgggatcatcctatg
gtgcaaggcacgatggacatgatttgtgatgatgactttggtagtgcttctgtagctttg
cttaaaaacaaaaaattaccaccaggtaccttttttgttgagctaatatttgtagccgaa
gctatggcaccaaaagccctgcaagtaggtcgctttttaccgccaacgcctattcgcata
ttacttgataaagccagtaataacctcggcgaaaacgtggcatttgatagctttaaccaa
cagctttcagccgttggtcgtcaaactgcaagtaaattagcaggcgctttacaaggtgcg
gttcacccaatgatcaacaccgcaaaagagatggctcagcaacagcttgaggttattcgc
agtgcgtcacttgaaaaaatgcaaagcaccttaggtgaagaacaagctcgccttgaagcg
cttaagcaaattaacccaaatattcgccaagaagaaattaccttcttcgataagcagcgc
agcgagctggcaacgcatatcgaaaaagcccagttaaaacttgatgcgatacgcttaatc
gtagtttcacactaa
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