Pseudoalteromonas sp. Xi13: EJ103_02930
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Entry
EJ103_02930 CDS
T10490
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pxsi03009
]
EJ103_02930 (srmB)
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ103_02930 (srmB)
Ribosome biogenesis [BR:
pxsi03009
]
Prokaryotic type
rRNA helicases
EJ103_02930 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_30
AAA_22
AAA_11
PhoH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZN31739
LinkDB
All DBs
Position
1:complement(660220..661449)
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AA seq
409 aa
AA seq
DB search
MQFSEFDLDTKLLNAIDKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI
QYLMDFPRRDPGFARVLIMTPTRELAYQIHEQCELLAKGTHLKIGVVTGGINYGTHKEIF
ENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQ
CFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVNTL
NGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRILI
ATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILYKV
ERYTEQKLKRRIIKGLEPQHKEAKPPAKKRKDPVKMKAKKKAKAKIKKK
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaatttgatcttgatactaaactactcaacgccattgataaaatgggc
tacgagacaccaaccagcattcaacaacaagctattcctgaagcgctgcaaggtcgcgat
attttagcatcagcacctactggcacaggtaaaacggcggcatttttaattccggctatt
caatacttaatggattttccgcgtcgcgacccaggttttgcacgtgtgttaataatgacc
ccaacccgtgaactggcttatcaaattcatgagcaatgtgaactgcttgctaaaggcacc
caccttaaaattggtgtagtaacaggtggtataaactacggcacccataaagaaattttt
gaaaacaataacgatattttaatcgccacaccagggcgtttaatggaataccttgaaacc
gaaaatttccatgctgaaaacgtagaaatgcttattcttgatgaagccgaccgcatgtta
gacatgggctttagaaaagaaatgctgcgcatatgtgacgaagctaaaaaccgtcgtcag
tgctttttattctctgcgacgttagaaggcgatagcgttgagttatttgcagagcgtatt
ttaaacgacccagctttacttgaagccgaatcgtcacgcaaagaaaaagcaaaaattcat
caatgggttcaccttgctgatgattaccaccacaagcttgagctgttggttaatacccta
aacggcccagatgtaagtaaagccattgtgtttgtaaaaacccgtgagcgcctagaaacg
ctaattggtgagctaactaacaatggcgtaaaagccgcgtggctgcgtggcgaaatgccg
caagataagcgcatgaaagcgatggaaaatttccacagtggcaaaacgcgcatattaata
gcaaccgatgttgcggctcgcggtattgatgtttctgacattagccacgtaattaacttt
gatatgccgcgcactgccgatgtctatgttcaccgtattggccgtactggccgtgcaggt
aaaaaagggattgctatatcattagttgaagcgcacgacattggcattttatacaaggtt
gagcgatacacagagcaaaaacttaagcgccgcataattaaagggcttgagccacagcat
aaagaagctaagccacccgctaaaaagcgtaaagatccggtaaaaatgaaagctaagaaa
aaagccaaagctaaaattaaaaagaaatag
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