Pseudoalteromonas sp. Xi13: EJ103_05210
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Entry
EJ103_05210 CDS
T10490
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ103_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxsi03019
]
EJ103_05210
03009 Ribosome biogenesis [BR:
pxsi03009
]
EJ103_05210
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ103_05210
Messenger RNA biogenesis [BR:
pxsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ103_05210
Ribosome biogenesis [BR:
pxsi03009
]
Prokaryotic type
rRNA helicases
EJ103_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZN32161
LinkDB
All DBs
Position
1:complement(1153328..1155145)
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AA seq
605 aa
AA seq
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MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRINALKEKLTLALENKDITFFNEVAASMAQKLDLSLEDLA
GALLCLAQQQSPIKVEEVKIQPRNERNTRNERGDRNDRRRNERGDRPERKPRERNSRDAG
PMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDVLDH
FQKVFICKRPMGMTLTQDQGPAEPRGERAERPSGDKKRSFNKDNQRGDKRGGPRKERRPV
SFTSN
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttaaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaactgcagcatttgca
ctgccgttactaaacaatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagttgctgaggcatttgaacaatatgcaaaaggtact
cgtggtgttgaagtattagcactgtacggtggccaaagctacagcattcaattaagcgca
cttcgtcgtggcgcacaaattattgttgctactccgggtcgattaatcgatcacataaac
cgtggcactatcaagtttgatgctttacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgttgaaaacatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaacattagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgtaactcaactgtatcatctgttgag
caagtgttttggaatgcacacgtacataaaaacaaagccattgttcgtttcttagaagca
gagcaatacgaaggtgctattgttttcgtacgtacacgtaacgacacagtgcaacttgct
gagttactagaacgcgaaggtttctctgctgcgccacttaatggtgacatgaaccagcaa
gcacgtgaacgcacggtagatcgcttaaaaagcggtatgctaaacgttgttattgcaaca
gacgtagcagcacgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccgcaagactcagaagcctacgttcaccgtatcggccgtacaggtcgtgctggacgtact
ggtaaagcaattttatttgttaagcataacgaacgttatttacttaaaaatatcattcgt
catactaagtctgaaattgcacaagttgagctacctacagctaaagtagttgaagaaaaa
cgtattaatgcgttaaaagaaaagcttacgcttgctcttgaaaacaaagacattacgttc
ttcaatgaagttgctgctagcatggcacaaaaactagacttatctttagaagacctagcg
ggtgcattactgtgtttagcacagcaacagtcgccaattaaagttgaagaagttaagatt
caacctcgcaacgagcgtaatacacgtaacgagcgtggcgatcgtaatgaccgtcgtcgt
aacgaacgtggtgaccgccctgagcgtaaacctcgcgagcgtaacagccgcgatgcaggc
cctatggatacttaccgtatcgaagtgggtcgtgagcacggtgtacaggttaaaaacatt
gttggcgcgattgctaacgaagctgatatctcaagcaagtttattggtgacattcgtcta
cacgacagtcacagtacggtacaattaccgcaaaacatgcctaaagatgtacttgatcac
ttccaaaaagtgtttatttgtaaacgcccaatgggtatgacactaacacaagatcaaggc
ccagctgagccacgtggtgaacgcgctgagcgcccaagtggtgataaaaagcgtagcttt
aacaaagacaaccaacgcggtgataagcgtggcggtcctcgtaaagaacgtcgccctgtg
agcttcacatctaactaa
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