Pseudoalteromonas sp. Xi13: EJ103_05310
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Entry
EJ103_05310 CDS
T10490
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ103_05310 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxsi03019
]
EJ103_05310 (pnp)
03016 Transfer RNA biogenesis [BR:
pxsi03016
]
EJ103_05310 (pnp)
Enzymes [BR:
pxsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EJ103_05310 (pnp)
Messenger RNA biogenesis [BR:
pxsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EJ103_05310 (pnp)
Transfer RNA biogenesis [BR:
pxsi03016
]
Prokaryotic type
tRNA degradation factors
EJ103_05310 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
OB_PDCD11
S1_2
KH-I_KHDC4-BBP
KH_2
S1_TP0910
KH_SLS1_2
aRib
KH_NusA_2nd
DUF3016
Motif
Other DBs
NCBI-ProteinID:
AZN32178
LinkDB
All DBs
Position
1:1175396..1177522
Genome browser
AA seq
708 aa
AA seq
DB search
MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN
PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG
TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQAIITAINEFKAEAGKPTWDWTAPEKNVS
LEEKVASLASDKVGEAYRITDKVARKEALGVAKDAVIEALTGELAEGETLDKQEVGKVFG
SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTL
TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVL
SDILGDEDHLGDMDFKVAGTSNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMD
EAISAPSEELSMFAPRIYTMQIPAKKIAEVIGKGGATIRQLTEETGTTIEIEDDGTIKIA
ATDGESAQNAITRIEQLTAELEVGTIYTGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMDSAAPAADESKDA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaattattaaagaatttcaactaggtcaacacacagtaaccctagaaacaggt
gctatcgcacgtcaagcagacggcgcagtattagcaagcattggcgacacttcagtactt
gttactgttgttggtaagcgtgaagctcagccaggtcaagacttcttcccactaacagtt
aactaccaagagcgtatgtacgctgctggtcgtatcccaggtggtttcttaaagcgtgaa
ggtcgtcctaacgatggcgaaacactaattgcacgtcttattgaccgtccaattcgtcca
cttttcccaaatggcttcgtaaacgaagtacaagttattgctacagttgtttctgttaac
cctgaaatccaaccagatatggttgcgatgattggtacttcagctgcacttgctatctct
ggtatcccgtttagtggtccaattggcgcatctcgcgttggttacatcaacggtgagtac
gtacttaacccgacgctaaaagagcttgaagaaagccaacttgatttagtagtagctggt
actgataacgcagtattaatggttgagtcagaagctgacgtacttgcagaagacgtaatg
cttggtgctgttgtatatggccatgagcaatctcaagctatcattacagcaattaacgaa
tttaaagcagaagcaggcaagcctacatgggattggactgcacctgagaaaaacgtttct
cttgaagaaaaagtagcatcacttgcatcagataaagtaggcgaagcttaccgcattact
gataaagtagcgcgtaaagaagcacttggcgtagctaaagatgcagtaatcgaagcacta
acaggcgaacttgctgaaggcgaaacgcttgataagcaagaagtgggtaaagtattcggt
tcacttgagaagaaaattgtacgtggccgcattgctgcaggcgaaaaacgtatcgatggt
cgtgaaccagatatgatccgtgctcttgacgtaatgactggcgtattaccgcgtactcac
ggttctgctatctttacacgtggtgaaactcaagcactagttacagctacacttggtaca
gaacgtgattcacagttaatcgatgatttaactggcacacacaaaaaccactttatgctt
aactacaacttccctccattctgtgtgggtgaaactggttttgtaggttctcctaagcgt
cgcgaaatcggtcacggtaacctagctaagcgtggcatttctgctgtaatgcctacactt
actgagttcccttactcaatccgtgttgtttctgaaattacagaatcaaatggttcttct
tcaatggcttctgtatgtggtacgtcactagcgcttatgaacgcaggtgtaccaattaaa
gcatctgttgcgggtatcgcgatgggcttagttaaagaagacgaaaaattcgtagtgctt
tcagatatcttaggtgatgaagatcacttaggtgacatggactttaaagtagcaggtact
tcaaacggtatcactgcactacaaatggatatcaagattgaaggtatcacgcaagaaatc
atgcaaattgcgcttaaacaagcaaaagctgcacgtttacacattttaggtgtaatggat
gaagcgatttctgcaccttctgaagaattatcaatgtttgctccgcgtatctacactatg
caaattcctgctaagaagatcgctgaagttatcggtaaaggtggcgctacaattcgtcaa
cttactgaagaaacaggcactactattgaaattgaagacgacggtacaattaaaattgct
gcaacagacggtgaaagcgcacaaaacgcaattacacgtattgagcaattaacagcagaa
cttgaagtaggtactatctacactggtaaagttgtacgtattgttgactttggtgcgttt
gtaaacattcttcctggtaaagatggcttagtgcatatctcacaaatcagcacagaacgt
gttaacaacgtgactgaccacctaagcgaaggtcaagaagttaaagttaaagtactagaa
gtagaccgccaaggccgtgtacgtctaagcattaaagaagcaatggattcagctgcacca
gctgctgatgagtcaaaagacgcataa
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