Pseudoalteromonas sp. Xi13: EJ103_06005
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Entry
EJ103_06005 CDS
T10490
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ103_06005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxsi03019
]
EJ103_06005
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ103_06005
Messenger RNA biogenesis [BR:
pxsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ103_06005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZN32305
LinkDB
All DBs
Position
1:1322643..1324034
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AA seq
463 aa
AA seq
DB search
MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLI
ELLSKGSKAKSNHVRALILAPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDNVEVLVLDEADRMLDMGFIHDIKRLIAKMPPKRQ
NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKSRKTALLSHLIRS
NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTADDAADLYGIER
FIGELIPRAEEPGFEPTSPVPERALDARPIKPKKPKKAKQPFNKPKSDKPNSKKPNNGGS
GTGPRRGGSKKPAAKTDDNAQSPWAKRQSVGGNGQRRRRPNND
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatggtttaggtttatcacagtctttagttaacgcggttttagaaaagggc
tatgaaacgccaacgcctattcaggctcaagcaattcctgcaattattgaacgtcgcgat
gtgatggcggctgcacaaacaggcacaggtaaaaccgccggttttacgttaccgctaatt
gagctgttatctaaaggcagtaaagcaaaaagtaaccacgtacgagcccttattttagcg
cctacgcgtgagctggctttgcaggtaagcgaaaacgttgaagaatacgctaagcactct
gatgtaagttcgtttgtagtgtacggcggcgtaaaaataaacccacaaatgcagcgcctt
cgtaaaggggttgatattttagtggccacgcctgggcgtttaatcgatttacataatcaa
aacgctgttaagtttgataatgttgaagtgctggtacttgatgaagcggaccgcatgctt
gatatgggctttattcacgacattaaacgcctgattgctaaaatgccgcctaaacgccaa
aacttaatgttttcggcaacgttttcagatgatatacgtgcattagcaaaagggttaatt
aacgaccctgttgaaatatcagttgcggcaaaaaacaccactgctaaaagcgtaacgcaa
agcgtttacgctgttgataaatcgcgtaaaaccgcattacttagccatttaattcgtagc
aacgattggcaacaagtattagtgtttagccgtaccaagcacggagcaaatcgtttagtt
aaacagcttgagcgcgacgacatagtaggcgccgctattcatggtaataaatcacaaggc
gctcgtgttaaagcgcttgatggctttaaaagtggtgaagtacgcgtacttgtagccact
gatattgtggcacgtggtcttgatattgttgagcttccgcatgtggttaactacgactta
ccaaacgtatacgaagattacgttcaccgtattggccgtaccggtcgtgctggtgcatca
gggcatgctatttcgtttgtaacagccgatgacgccgctgatttatacggtattgaacgt
tttattggtgagctaatccctcgcgctgaagagcctggatttgaaccaactagcccagta
cctgagcgcgcattagatgctcgcccaattaaacctaaaaagcctaaaaaagcaaagcag
ccgtttaacaagcctaagtctgataagccgaacagcaaaaaaccaaacaatgggggaagc
ggtaccggccctcgtcgtggtggttctaaaaaaccagcagcgaaaactgatgacaacgca
caaagcccatgggcaaagcgccaatcggtaggtggtaatggccagcgccgtcgtcgccca
aataacgattaa
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