Pseudoalteromonas sp. Xi13: EJ103_06570
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Entry
EJ103_06570 CDS
T10490
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJ103_06570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxsi03400
]
EJ103_06570
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJ103_06570
DNA repair and recombination proteins [BR:
pxsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJ103_06570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZN32392
LinkDB
All DBs
Position
1:complement(1443241..1446714)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLTGSALSIAIAEGVKQQNDLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIVPVSTLMLRT
APASFIYGSTLNFKVGDKLDTHNLRSNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSV
HPFRLDFFDDELDSIRLFDVETQRSDEKVDKIELLPAHEFPTNEADVERFRINYRDKFGA
SSEQDSVYMQVSKGTWPAGIEYYMPLFFEKLATIFDYLPNTTTVMQLGDLEHAADTFWHD
VNVRYENRKVDPLRPLLAPSELYQPINELFSNLGEFSRIRLSQAKLPTKASNKNLNVSEL
PAVRIDHKQHEPYGAFINYVAEQKKNKSRILLSVESDGRRESLLSVLKPSGLKFKEFESL
QQFTQSQSDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPIVHLDHGVGRYQGLQTIDAAGVITEFVTITYAGEAKLYVPVSALHMLSR
YSGGEESSAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFALDGQSYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKLAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAVLVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMADGKLDIVIGTH
KLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKSLRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDSDLIREAILREIKRGGQVYFLHNNVETIERVSQEISD
WVPEASVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDAKALSKDATKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALKNGKEPTLENLLQQQTEVDLKLPAL
LPDDYIHDVNARLGMYKRIASCANLADMDELQVELIDRFGLLPDATKNLFSMQQLKMRAS
DLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPHVYKMDGANKLRFAINEVNPRER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccgtgggtaaaatctcaaaaagataaaattcaa
tgggggcagctaactggcagtgcactaagtatagccattgcagaaggtgtaaaacagcaa
aacgatttagtgcttattgttacgccagatacgccaagcgcattgcgacttgaaaccgag
ctcgaatacttattgccagataacccggtaatggtatttcctgattgggaaaccttgccg
tatgaccatttttctccgcaccaagatattatttcagcgcgcttagccactttaaacact
ttaaaaaacgagcagcaaagcgtacttatagtgcctgtatctacgttaatgctacgtact
gcgcctgcttcgtttatttatggctctacccttaattttaaagtaggcgataaactcgac
acccataacctgcgcagtaatttagaacaagcagggtatttaaacgtacaacaagtaatg
gagcacggtgaatacgcaattcgtggatctattgttgatttgtacccgatgggcagcgtg
cacccatttaggctcgacttttttgatgatgaactcgactctattcgtttatttgacgta
gaaacccagcgctcagatgaaaaagttgataaaattgagttacttcccgcgcatgaattt
ccaaccaacgaagcagacgttgagcgttttagaataaattatcgcgacaaatttggggcc
agctcagagcaagactctgtttacatgcaagtaagcaaaggtacttggcctgcgggtatt
gaatactacatgccgctgttttttgaaaagcttgccaccatttttgattacttgccaaac
accactacggttatgcaactaggtgatttagaacacgccgcagataccttttggcacgat
gtaaacgtacgctacgaaaaccgaaaagtagatcccctgcgtccactactggcgcccagc
gagttgtatcaacctattaatgagttgttttctaatttaggtgagttttcacgaatacgt
ttatcgcaagctaaattacccactaaagcaagcaataaaaacttaaatgtgagcgagctg
cccgcagtaagaatcgatcataaacaacacgaaccctacggcgcatttattaactatgtg
gcagagcaaaaaaagaataaaagccgtattttattaagtgttgagtctgatggtcgccgc
gagtctttattaagcgtgcttaagccaagcggcttaaagtttaaagaatttgaaagctta
cagcaatttacacaaagccaaagcgatgtaggcttaattgtaagccctcttgagcaaagt
gttgtactgggtacaaaaccgagcctttctattattaccgagcaagagctgttaggtatt
aaggtgtcgcaacgcaggcgccgtaaacataaatacgaagcaagccaagatgcgctaata
cgcaacttagccgagcttaaagagggccagccaattgtgcaccttgatcacggtgttgga
cgctatcaaggcctgcaaacaattgacgcagcaggtgtaatcactgagtttgttaccatt
acctatgccggtgaagcaaaactgtatgtgccggtatcggcactgcatatgctaagccgt
tattcgggcggtgaagaatcaagcgccccgcttcacaaacttggttcagatgcgtgggag
aaagccaaaaaacgggccgccgaaaaagtacgtgatgtagccgcggagctgttagatatt
tacgcacagcgccaagcaaaaccaggtaataaatttgcactcgatgggcaaagttatcgc
caatttagcgacagctttccatttgaagaaaccgacgatcagcgtaatgccattgaagcc
gtacttggtgatatgcaatcaaaacttgctatggaccgtttagtgtgtggtgatgtaggc
tttggtaaaacagaagtggctatgcgtgccgcgtttgtagcggttaacgataacaaacaa
gtagccgtattagtaccaaccaccctgctggctcagcaacattatgaaaactttaaagac
cgctttgccgattttcctatcgaagtgggagtgttgtcgcgctttaattcaactaaagag
caaaaagacacgcttgaaaaaatggccgacggtaaacttgatatcgttattggaacgcat
aaattaattcagcaagatattaaatttaacgatttaggtttactgattgttgatgaagag
caccgctttggtgtacgccaaaaagaaaaaataaagtcattacgtgctgatgtagatata
ttaacgctcactgcaacgcctattccgcgtactttaaatatggcgatgagcggcatgcgt
gatttatcaattattgccaccccacctgctaagcgtttagcggttaaaacctttgtacgc
caacgcgacagcgacttaatacgcgaagccatactgcgtgaaattaaacgcggcggccaa
gtgtactttttgcataacaatgttgagactattgagcgagtctcgcaagagatcagcgat
tgggtgccagaggctagtgtcacctctgctcatgggcaaatgcgcgagcaagagcttgag
caaataatgacagacttttatcatcaaaaatacaatgtactggtatgtaccaccattatc
gaaaccggtattgatgtgcctactgctaatactattattatggacagagccgataaactt
ggccttgcgcaattacaccaattacgcggtcgtgttgggcgaagccaccaccaagcgtat
gcttatttattaaccggcgatgctaaagcactttctaaagatgccaccaaacgcttacaa
gcaatcgagtcgttggaagatttaggcgcaggttttgcccttgctacacatgatttagaa
atacgtggtgcgggtgagctattaggcgacgatcaatcagggcaaatgcaaactattggc
tttagcttgtatatggaaatgctagagcaagcggttaatgcccttaaaaatggaaaagag
ccaacgcttgaaaacctgcttcagcagcaaactgaagttgatttaaaactccctgcctta
ctacctgatgattacatacacgatgttaatgcgcgtttaggtatgtacaagcgcattgca
agttgtgctaaccttgccgatatggacgaattacaagtagagctaatagaccgctttggt
ttattacctgatgccactaaaaacctatttagtatgcagcaactgaaaatgcgtgctagc
gatttaggaattacaaaaatagaggcaaaccctaaagggggctactttgaatttagccaa
aatacgaaggttaatcctagcttcatcataggcttgatacaaagtgcaccccatgtgtac
aaaatggatggcgcaaataaattgcgctttgcaattaatgaggtaaaccctcgtgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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