Pseudoalteromonas sp. Xi13: EJ103_07175
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Entry
EJ103_07175 CDS
T10490
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxsi03032
]
EJ103_07175 (topA)
03400 DNA repair and recombination proteins [BR:
pxsi03400
]
EJ103_07175 (topA)
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EJ103_07175 (topA)
DNA replication proteins [BR:
pxsi03032
]
Prokaryotic type
DNA Topoisomerases
EJ103_07175 (topA)
DNA repair and recombination proteins [BR:
pxsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EJ103_07175 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AZN32509
LinkDB
All DBs
Position
1:1581648..1584344
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AA seq
898 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSIGHVRDLPTSGSNKAKVPATKTPAEVRKME
PEEKAAYKQQRDYTNLVARMGIDPEKGWEPHYEILPGKEKVVQELKKLAENADQVYLATD
LDREGEAIAWHLQEIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNTDS
QLRLEVTKQADKPFKPVNEAQATAAVKSLETAEYKVISVEEKPSKSRPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVEMCRDYVTQEFGAKYLPKDP
ISYSSKGNAQEAHEAIRPSSVTVLSGHVEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVTADEFQLKAKGRVLRFDGWTKVQPAVRKKNEEDQSLPAVKEGEVLSLIELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTQVLDKFYADFSTQLNIAKDEPEQGGMRLNQ
MVETDIDCPTCGRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADVEDIE
TETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACEGYIVEQGTFKIKGYDGPIIECD
KCGSDMELKSGRFGKYFGCNNEECKNTRKLLKNGEAAPPKEDPVHIPELECEKSEAYFVL
RDGAAGIFLAANTFPKSRETRAPKVAELKRFRERISPKFYYLADAPEKDPDGNLAVVRYS
RKNKAQYVMTEVDGKATGWTAHYEAGKWVEEAKKKAAPKKKAAAKKSPAKPKAKKEAE
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatac
ttaggtaaagacttcatcgtaaagtccagtattggacatgtgcgtgatttacctacttca
ggttcgaacaaagctaaagtaccggcgactaaaacgccagctgaagttcgtaaaatggag
cctgaagaaaaggcagcgtataaacagcaacgagattacactaacttagttgcacgtatg
ggtattgatcctgaaaaagggtgggagccacattacgaaattttgccaggtaaagagaaa
gtagttcaagagttaaaaaagctggccgaaaatgcagaccaagtttatctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaattattggtggtgagcct
gaaaaatataaacgcgttgtatttaacgaaattacaaaaaatgcgattcaacaagcgttt
gaaacacctggtgaactaaataccgacatggtatatgcacaacaaacacgccgcttttta
gaccgtgtagttggctttatggtatcgccgttattatgggctaaagtagcgcgtgggctt
tctgctgggcgtgtgcaatcggttgcggtacgtttattagtagagcgcgaacgtgaaatc
aaagcgtttattcctgaagaattttgggatatacacgccgatgttaaaaataccgattca
caattacgcttagaagtcaccaagcaagcagataagccatttaagccggtaaatgaggct
caggctacagccgcagttaaaagccttgagacagccgaatataaagtaataagtgttgaa
gaaaaacccagcaaaagccgcccaagtgcgccttttattacttcaaccatgcaacaagcc
gccagtacacgtttaggctatggcgttaaaaaaacaatgatgcttgcacagcgcctctac
gaaggcggttacattacttatatgcgtaccgattcaactaatctatcaaaagatgcagtt
gaaatgtgtcgtgattatgtaacccaagagtttggcgcaaagtacttacctaaagaccca
attagctacagctctaaaggcaacgcacaagaagcgcacgaagcgatccgtccttcaagt
gtcactgtactttctggacatgttgaaggtgttgatgccgatgccaaaaaactgtacgaa
ttaatttggcgtcagtttgttgcctgtcaaatggtgcctgcagagtacgatttaacaacg
cttactgtgaccgctgatgagtttcaattaaaagcaaaagggcgagtacttcgctttgat
ggttggacaaaagtgcaacctgcggtacgcaaaaagaatgaagaagatcaatctctgcca
gcagtaaaagaaggcgaagtacttagtttaattgaacttgaccctaagcagcactttact
aaaccgccagcgcgctttagtgaagcaagtttagtaaaagagcttgaaaaacgtggtatt
ggtcgtccatctacgtacgcatcaattatttcaacaattcaagaccgtggttatgtacgg
gtagaaaaccgtcgtttcttcgctgaaaaaatgggcgaaattgttaccgaccgtttggtt
gaaaacttcactgatttaatgaactttgactttacagcaaaaatggaaggtcgtttagat
gatatcgccgaaggcgagcgtgtatggacccaagtgcttgataagttttatgctgatttt
tctacgcaattaaacatagccaaagatgagccagagcaaggcggaatgcgccttaatcaa
atggttgaaactgatattgactgccctacgtgtggcagaaaaatgggtattcgcacggca
tctacaggggtgtttttagggtgtacaggttataacttaccgcctaaagagcgttgtaca
accactatgaacctagtatcaggggatgaagcggttgcggcagatgttgaagacattgaa
actgaaacattaatgcaaatgaagcgctgtccaatctgtgaaacggctatggactcttac
ctaatagacgaaacccgtaaattacatgtttgtggtaataaccctgcatgtgaagggtat
atcgttgagcaaggtacctttaaaattaaaggatacgatgggcctattatcgaatgtgat
aaatgtggctcagacatggagcttaagtcgggccgttttggtaagtattttggctgtaac
aacgaagagtgtaaaaatacgcgtaagttacttaaaaacggcgaagctgcgccaccaaaa
gaagatcctgtgcacatacctgaacttgaatgtgaaaagtcagaagcttattttgtttta
cgtgacggggctgcaggtattttcttggcggctaacactttccctaaatcacgcgagacg
cgagcgcctaaagtggctgagctaaagcgttttagagagcgtatttcacctaagttttat
tacttagctgatgcgccagaaaaagatcctgatggtaatttagccgtagtacgttatagc
cgtaaaaataaagcgcaatacgtaatgactgaagttgacggaaaagccacaggctggact
gctcactatgaagcgggtaaatgggtagaagaagcgaagaaaaaagcagcacctaaaaag
aaagcggctgcaaaaaaatcgccagctaaacctaaagcaaaaaaagaagctgaataa
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