Pseudoalteromonas sp. Xi13: EJ103_12590
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Entry
EJ103_12590 CDS
T10490
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxsi03032
]
EJ103_12590
03400 DNA repair and recombination proteins [BR:
pxsi03400
]
EJ103_12590
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EJ103_12590
DNA replication proteins [BR:
pxsi03032
]
Prokaryotic type
DNA Topoisomerases
EJ103_12590
DNA repair and recombination proteins [BR:
pxsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EJ103_12590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
N_formyltrans_C
Choline_bind_3
Motif
Other DBs
NCBI-ProteinID:
AZN33502
LinkDB
All DBs
Position
1:complement(2803787..2804764)
Genome browser
AA seq
325 aa
AA seq
DB search
MKLIYVDDNLPGITRKRKNKTWLYFDPIGKQITDQKVIDRLNALAFPPAYKNAWFCPEEN
GHILATGVDSKGRKQYRYHEDFRAQQEAKKYQACGVFGNKLPLLRARLENDLQGDELSVE
RTLAAVVRLMDLGALRVGNERNVKQNKSFGATTLRNRHAKLTGKNIQLRYRAKSGKEREV
NITDRVLSHVIKDLQDLPGQHLFQYISDGERTNVTSSEINQYIQQIMGEDFSAKHFRTWR
ASVIAFKQLVKAKGALSLKSMLESVSEQLGNTPAIARKSYVHPDLIALCKEDEQTQTAWR
ESLSLPRKTKYLSRYERGFLAFLKD
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaatctacgtagatgataatttacccggtataacccgtaagcgtaaaaacaaa
acgtggctgtactttgacccaataggaaagcaaattaccgatcaaaaagtgattgatcgt
ttaaatgcgttagcgtttccgcccgcctacaaaaatgcttggttttgccctgaagaaaat
ggccatattttagcaaccggggtagatagtaaaggtcgtaagcaataccgctaccatgaa
gattttagagctcaacaagaggcgaaaaaataccaagcctgtggggtgtttggcaataag
ctgccattactgcgtgcccgtttagaaaacgatttacaaggggatgagctcagcgtagag
cgcacattagctgcggtagttaggcttatggacttaggtgcattgcgggtaggtaacgag
cgaaatgtaaagcaaaacaaaagttttggcgccacaaccctgcgcaatcgccatgctaag
cttacgggtaaaaatatacagctacggtatcgggctaaatcgggcaaagagcgcgaggta
aacataaccgacagagtgcttagccatgtaattaaagacctacaagatttacccggtcag
catttgtttcaatatataagcgatggagagcgcacaaacgtaacctctagtgaaattaac
cagtatattcaacaaataatgggtgaggactttagcgctaagcactttagaacctggcga
gccagtgttattgcctttaagcaacttgtaaaagcaaaaggcgcacttagtttaaaaagt
atgctcgagagcgtgtctgagcagctaggtaatacgcccgctattgcccgtaaatcgtat
gttcacccggatttaattgccttgtgtaaagaggatgaacaaacccaaacagcgtggcga
gagtcgctttctttaccgcgaaaaacaaaatacttgagtcgttatgagcgtggcttttta
gcctttttaaaagactaa
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