Pseudoalteromonas sp. Xi13: EJ103_12930
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Entry
EJ103_12930 CDS
T10490
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pxsi Pseudoalteromonas sp. Xi13
Pathway
pxsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ103_12930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxsi03019
]
EJ103_12930
Enzymes [BR:
pxsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ103_12930
Messenger RNA biogenesis [BR:
pxsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ103_12930
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AZN33569
LinkDB
All DBs
Position
1:complement(2881996..2883246)
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AA seq
416 aa
AA seq
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MSATSFSSLKLDSLLLTAIEQNNYTTPTAIQVKTIPHILAGSDVMGSAQTGTGKTAAFVL
PLLHKLLNTPKKDEPGIARVVILTPTRELAQQVFASFEKYAQGTNIQGALAYGGASIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEERKRELVSHM
IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVL
VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEE
IEVLLDTRLAPQWLEGYEPDLNKPPKDNRKNTNKARKDRDKKRITGQRAPSKRRRK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacatcgttctcatctcttaaactcgattcgttattactaaccgcaattgag
caaaataattacaccacgcctaccgcaattcaggttaaaactattccgcacatattagcg
ggcagcgatgtaatgggcagcgcgcaaacaggcacaggtaaaacagccgcctttgtatta
ccactactacataagcttttaaatacaccaaaaaaagatgagccaggcatagcccgagtg
gttattttaacgcccacgcgtgagcttgctcagcaagtgttcgcaagctttgaaaaatac
gcccaaggcacaaatattcaaggcgctttagcgtatggcggtgcaagtattggcccgcaa
attaaagcgcttaaaacggcgcaagtgatagtcgcaacgcctgggcgtttacttgatcat
attgttaaaggcagtgtggtgctttcaagtgttgattcgttagtatttgatgaagccgac
cgcatgctggatatgggctttattgatgaaataaaacgtattttgcgccacattccgggc
gatcgccaaaccttattgttctcagccacattcgatgacagcgtgtttgagctgagtaaa
aaactacttaaaaaccccgagctaattgaagttgataaacgcaactctgctgctgtagag
gttgaacaagttatttacgcagttgatgaagagcgaaagcgcgagcttgtatcacacatg
attggcatgaaaaattggcgccaagtacttatatttacacgcaccaaacaaatggccgat
aaacttgccaaagaaatgtgtaaagacggcttaaaaactgagtctatccatggcgataaa
tctcaaggtgcacgcgaccgtgcattacaaaactttaaagaaggcacaacgcgggtttta
gttgccaccgatgtagctgcccgcggtttagatattccggcgcttaaatacgtaataaac
tttgagctaccttacatagcagaagattacgtacaccgaattggtcgtacggggcgcgct
ggcgagcaaggccttgccatgtcgctggtaagtattgacgagcagtggttactggaagaa
attgaagtactactggatacccgcttagcaccacaatggctagaaggttacgagcctgat
ttaaacaagccccctaaagataaccgtaaaaacaccaacaaagcgcgtaaagatcgcgat
aaaaagcgcattaccgggcaaagagcaccaagtaaacgccgcagaaagtag
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